VertU: universal multilocus primer sets for eDNA metabarcoding of vertebrate diversity, evaluated by both artificial and natural cases
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Dan Liang | Peng Zhang | Xilin Liu | Lu Zhang | Qiaoyun Wang | Zichen Wang
[1] S. Lavoué,et al. Assessing a megadiverse but poorly known community of fishes in a tropical mangrove estuary through environmental DNA (eDNA) metabarcoding , 2022, Scientific Reports.
[2] R. Meier,et al. Network analysis with either Illumina or MinION reveals that detecting vertebrate species requires metabarcoding of iDNA from a diverse fly community , 2022, bioRxiv.
[3] M. Gaither,et al. Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary , 2022, PloS one.
[4] R. Naidoo,et al. eDNA sampled from stream networks correlates with camera trap detection rates of terrestrial mammals , 2021, Scientific Reports.
[5] J. DiBattista,et al. Monitoring vertebrate biodiversity of a protected coastal wetland using eDNA metabarcoding , 2021, Environmental DNA.
[6] E. Clare,et al. eDNAir: proof of concept that animal DNA can be collected from air sampling , 2021, PeerJ.
[7] S. Domisch,et al. Improving the reliability of eDNA data interpretation , 2021, Molecular ecology resources.
[8] N. Sales,et al. New 12S metabarcoding primers for enhanced Neotropical freshwater fish biodiversity assessment , 2020, Scientific Reports.
[9] M. Bunce,et al. Development of a 16S metabarcoding assay for the environmental DNA (eDNA) detection of aquatic reptiles across northern Australia , 2020, bioRxiv.
[10] R. Hanner,et al. Validating environmental DNA metabarcoding for marine fishes in diverse ecosystems using a public aquarium , 2020, Environmental DNA.
[11] T. Schenekar,et al. Reference databases, primer choice, and assay sensitivity for environmental metabarcoding: Lessons learnt from a re‐evaluation of an eDNA fish assessment in the Volga headwaters , 2020, River Research and Applications.
[12] S. Goodman,et al. Novel universal primers for metabarcoding environmental DNA surveys of marine mammals and other marine vertebrates , 2020, Environmental DNA.
[13] Jindong Zhao,et al. A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish , 2020, Methods in Ecology and Evolution.
[14] D. Sims,et al. Non‐specific amplification compromises environmental DNA metabarcoding with COI , 2019, Methods in Ecology and Evolution.
[15] Frédéric J. J. Chain,et al. Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities , 2018, Evolutionary applications.
[16] E. Harvey,et al. Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity , 2018, Conservation biology : the journal of the Society for Conservation Biology.
[17] Beth Shapiro,et al. Minimizing polymerase biases in metabarcoding. , 2018, Molecular ecology resources.
[18] C. Hardy,et al. Toward an ecoregion scale evaluation of eDNA metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray–Darling Basin (Australia) , 2018, Ecology and evolution.
[19] P. Taberlet,et al. Unlocking biodiversity and conservation studies in high-diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes. , 2018, Molecular ecology resources.
[20] P. Taberlet,et al. Environmental DNA: For Biodiversity Research and Monitoring , 2018 .
[21] Antton Alberdi,et al. Scrutinizing key steps for reliable metabarcoding of environmental samples , 2018 .
[22] Kristy Deiner,et al. Environmental DNA metabarcoding: Transforming how we survey animal and plant communities , 2017, Molecular ecology.
[23] Masayuki Ushio,et al. Demonstration of the potential of environmental DNA as a tool for the detection of avian species , 2017, bioRxiv.
[24] J. Freeland,et al. The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA. , 2017, Genome.
[25] Ben Nichols,et al. Distributed under Creative Commons Cc-by 4.0 Vsearch: a Versatile Open Source Tool for Metagenomics , 2022 .
[26] Masayuki Ushio,et al. Environmental DNA enables detection of terrestrial mammals from forest pond water , 2016, bioRxiv.
[27] R. Geffers,et al. Freshwater vertebrate metabarcoding on Illumina platforms using double-indexed primers of the mitochondrial 16S rRNA gene , 2016, Conservation Genetics Resources.
[28] L. Weyrich,et al. Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system , 2016 .
[29] D. Serre,et al. In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River , 2016, Scientific Reports.
[30] P. Taberlet,et al. Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding , 2016, Molecular ecology.
[31] C. Wilson,et al. Recognizing false positives: synthetic oligonucleotide controls for environmental DNA surveillance , 2016 .
[32] P. Taberlet,et al. obitools: a unix‐inspired software package for DNA metabarcoding , 2016, Molecular ecology resources.
[33] Jesse A. Port,et al. Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA , 2015, Molecular ecology.
[34] M. Kondoh,et al. MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species , 2015, Royal Society Open Science.
[35] Yiyuan Li,et al. Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding , 2015, Molecular ecology resources.
[36] P. Taberlet,et al. Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data , 2015, Molecular ecology resources.
[37] Eske Willerslev,et al. Environmental DNA - An emerging tool in conservation for monitoring past and present biodiversity , 2015 .
[38] Douglas W. Yu,et al. Environmental DNA for wildlife biology and biodiversity monitoring. , 2014, Trends in ecology & evolution.
[39] J. L. Gittleman,et al. The biodiversity of species and their rates of extinction, distribution, and protection , 2014, Science.
[40] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[41] Jesse A. Port,et al. Using Environmental DNA to Census Marine Fishes in a Large Mesocosm , 2014, PloS one.
[42] J. Geller,et al. Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all‐taxa biotic surveys , 2013, Molecular ecology resources.
[43] V. Ranwez,et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents , 2013, Frontiers in Zoology.
[44] M. Thomas P. Gilbert,et al. Screening mammal biodiversity using DNA from leeches , 2012, Current Biology.
[45] C. Wiuf,et al. Monitoring endangered freshwater biodiversity using environmental DNA. , 2012, Molecular ecology.
[46] V. I. Gusarov,et al. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems , 2012, Molecular ecology.
[47] L. Orlando,et al. Meta‐barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity , 2012, Molecular ecology.
[48] P. Taberlet,et al. Towards next‐generation biodiversity assessment using DNA metabarcoding , 2012, Molecular ecology.
[49] P. Taberlet,et al. Environmental DNA , 2012, Molecular ecology.
[50] John A Darling,et al. From molecules to management: adopting DNA-based methods for monitoring biological invasions in aquatic environments. , 2011, Environmental research.
[51] Alain Viari,et al. ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis , 2011, Nucleic acids research.
[52] François Pompanon,et al. Persistence of Environmental DNA in Freshwater Ecosystems , 2011, PloS one.
[53] François Pompanon,et al. An In silico approach for the evaluation of DNA barcodes , 2010, BMC Genomics.
[54] J. Landry,et al. A universal DNA mini-barcode for biodiversity analysis , 2008, BMC Genomics.
[55] P. Raven,et al. Taxonomy: Impediment or Expedient? , 2004, Science.
[56] R. Almond,et al. Living Planet Report 2020 - Bending the curve of biodiversity loss , 2020 .
[57] S. Salzberg,et al. FLASH: fast length adjustment of short reads to improve genome assemblies , 2011, Bioinform..