Relative stability of alternative chair forms and hydroxymethyl conformations of β-d-glucopyranose
暂无分享,去创建一个
Donald G. Truhlar | Christopher J. Cramer | Alfred D. French | Susan E. Barrows | C. Cramer | D. Truhlar | A. French | Frederic J. Dulles | F. Dulles
[1] B. B. Neto,et al. Comparative study of atomic charges derived from infrared intensities and from electrostatic potentials using AM1 and MNDO wavefunctions , 1992 .
[2] G. Chałasiński,et al. Perturbation analysis of the supermolecule interaction energy and the basis set superposition error , 1992 .
[3] Gábor I. Csonka,et al. Analysis of the core‐repulsion functions used in AM1 and PM3 semiempirical calculations: Conformational analysis of ring systems , 1993, J. Comput. Chem..
[4] M. A. Fabian,et al. The origin of the anomeric effect: conformational analysis of 2-methoxy-1,3-dimethylhexahydropyrimidine , 1994 .
[5] N. P. Franks,et al. Where do general anaesthetics act? , 1978, Nature.
[6] J. T. Ham,et al. The crystal and molecular structure of methyl β-cellobioside–methanol , 1970 .
[7] K. Schulten,et al. Erratum: Generalized moment expansion for observables of stochastic processes in dimensions d > 1: Application to Mössbauer spectra of proteins [J. Chem. Phys. 84, 4015 (1986)] , 1987 .
[8] D. Truhlar,et al. Direct dynamics calculations with NDDO (neglect of diatomic differential overlap) molecular orbital theory with specific reaction parameters , 1991 .
[9] Klaus Gundertofte,et al. A comparison of conformational energies calculated by molecular mechanics (MM2(85), Sybyl 5.1, Sybyl 5.21, and ChemX) and semiempirical (AM1 and PM3) methods , 1991 .
[10] C. Cramer,et al. Molecular orbital theory calculations of aqueous solvation effects on chemical equilibria [Erratum to document cited in CA115(19):207215n] , 1991 .
[11] P. C. Hariharan,et al. The influence of polarization functions on molecular orbital hydrogenation energies , 1973 .
[12] R. Franck. A revision of the value for the anomeric effect , 1983 .
[13] D. Rohrer,et al. The structure of gentiobiose , 1980 .
[14] R M Venable,et al. Molecular dynamics simulations of a lipid bilayer and of hexadecane: an investigation of membrane fluidity. , 1993, Science.
[15] G. A. Jeffrey,et al. The refinement of the crystal structures of -D-glucose and cellobiose , 1968 .
[16] Carlos Aleman,et al. Suitability of the PM3‐derived molecular electrostatic potentials , 1993, J. Comput. Chem..
[17] J. Tomasi,et al. The influence of the solvent on the conformational energy differences due to the anomeric effect , 1991 .
[18] George C. Shields,et al. Ability of the PM3 quantum‐mechanical method to model intermolecular hydrogen bonding between neutral molecules , 1993, J. Comput. Chem..
[19] Ernest L. Eliel,et al. Stereochemistry of Organic Compounds , 1962 .
[20] A. Cerezo,et al. Use of a general purpose force-field (MM2) for the conformational analysis of the disaccharide α-D-galactopyranosyl-(1→3)-β-D-galactopyranose , 1994 .
[21] J. Kroon,et al. Hydrogen-bond geometry around sugar molecules: comparison of crystal statistics with simulated aqueous solutions☆ , 1990 .
[22] J. Praly,et al. Influence of solvent on the magnitude of the anomeric effect , 1987 .
[23] James J. P. Stewart,et al. Bond indices and valency , 1973 .
[24] Saul Wolfe,et al. On the magnitudes and origins of the “anomeric effects”, “exo-anomeric effects”, “reverse anomeric effects”, and CX and CY bond -lengths in XCH2YH molecules☆ , 1979 .
[25] R. Dwek,et al. Analysis of glycoprotein-associated oligosaccharides. , 1993, Annual review of biochemistry.
[26] J. Pople,et al. Self‐Consistent Molecular‐Orbital Methods. I. Use of Gaussian Expansions of Slater‐Type Atomic Orbitals , 1969 .
[27] A. Vasella,et al. Glycosylidene Carbenes. Part 14. Glycosidation of partially protected galactopyranose-, glucopyranose-, and mannopyranose-derived vicinal diols , 1994 .
[28] Vincenzo Mollica,et al. Group contributions to the thermodynamic properties of non-ionic organic solutes in dilute aqueous solution , 1981 .
[29] J. Stewart. Optimization of parameters for semiempirical methods II. Applications , 1989 .
[30] Michael H. Abraham,et al. Thermodynamics of solute transfer from water to hexadecane , 1990 .
[31] D. Weaver,et al. An examination of intermolecular and intramolecular hydrogen bonding in biomolecules by AM1 and MNDO/M semiempirical molecular orbital studies , 1991 .
[32] A. Finkelstein,et al. Water and nonelectrolyte permeability of lipid bilayer membranes , 1976, The Journal of general physiology.
[33] J. Pople,et al. Self‐Consistent Molecular‐Orbital Methods. IX. An Extended Gaussian‐Type Basis for Molecular‐Orbital Studies of Organic Molecules , 1971 .
[34] Leo Radom,et al. The application of ab initio molecular orbital theory to the anomeric effect. A comparison of theoretical predictions and experimental data on conformations and bond lengths in some pyranoses and methyl pyranosides , 1972 .
[35] G. D. Hawkins,et al. Erratum: Comment by Prof. Cramer, Mr. Hawkins and Prof. Truhlar in Faraday symposium 29 on potential-energy surfaces and organic reaction paths (Journal of the Chemical Society, Faraday Transactions (1994) 90 (1802-1804) , 1994 .
[36] Bruce Tidor,et al. Solvent effect on the anomeric equilibrium in D-glucose: a free energy simulation analysis , 1991 .
[37] R. Hooft,et al. Molecular dynamics study of conformational and anomeric equilibria in aqueous D-glucose , 1993 .
[38] J. Phillip Bowen,et al. An ab initio study of dimethoxymethane protonation and its relevance to glycoside hydrolysis , 1989 .
[39] Eamonn F. Healy,et al. Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model , 1985 .
[40] C. Cramer. Anomeric and reverse anomeric effects in the gas phase and aqueous solution , 1992 .
[41] A. Abe,et al. Conformation and conformational energies of dimethoxymethane and 1,1-dimethoxyethane , 1990 .
[42] E. Davidson,et al. A possible definition of basis set superposition error , 1994 .
[43] D. Davies,et al. Intramolecular hydrogen bonding in 1'-sucrose derivatives determined by SIMPLE proton NMR spectroscopy. , 1986, Journal of the American Chemical Society.
[44] John W. Brady,et al. Molecular dynamics simulations of .alpha.-D-glucose in aqueous solution , 1989 .
[45] Norman L. Allinger,et al. Molecular mechanics parameters , 1994 .
[46] K. Merz,et al. Conformational preferences for hydroxyl groups in substituted tetrahydropyrans , 1992 .
[47] Miguel A. Ríos,et al. Semiempirical study of compounds with O‐HO intramolecular hydrogen bond , 1992 .
[48] Alfred D. French,et al. Analysis of the ring‐form tautomers of psicose with MM3 (92) , 1994, J. Comput. Chem..
[49] C. Cramer. Where is the unpaired electron in the phosphoranyl radicals H3PS− and H3PSH? , 1993 .
[50] Timothy Clark,et al. Multicenter point charge model for high‐quality molecular electrostatic potentials from AM1 calculations , 1993, J. Comput. Chem..
[51] Gabriel Cuevas,et al. Recent studies of the anomeric effect , 1992 .
[52] Peter J. Reilly,et al. Modeling of aldopyranosyl ring puckering with MM3 (92) , 1994 .
[53] Hiroshi Ohrui,et al. 1H-NMR studies of (6r)- and (6s)-deuterated d-hexoses: assignment of the preferred rotamers about C5C6 bond of D-glucose and D-galactose derivatives in solutions , 1984 .
[54] Norman L. Allinger,et al. Molecular mechanics. The MM3 force field for hydrocarbons. 2. Vibrational frequencies and thermodynamics , 1989 .
[55] Kenneth M. Merz,et al. A force field for monosaccharides and (1 → 4) linked polysaccharides , 1994, J. Comput. Chem..
[56] A. French,et al. Overlapping anomeric effects in a sucrose analogue. , 1993, Carbohydrate research.
[57] Walter Thiel,et al. Semiempirical methods: current status and perspectives , 1988 .
[58] Donald G. Truhlar,et al. Polarization of the nucleic acid bases in aqueous solution , 1992 .
[59] W. L. Jorgensen,et al. Monte-Carlo Results for the Effect of Solvation on the Anomeric Equilibrium for 2-Methoxytetrahydropyran , 1994 .
[60] George P. Ford,et al. Atomic charges derived from a fast and accurate method for electrostatic potentials based on modified AM1 calculations , 1994, J. Comput. Chem..
[61] S. F. Boys,et al. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .
[62] G. A. Jeffrey,et al. Stereographic representation of the cremer-pople ring-puckering parameters for pyranoid rings☆ , 1979 .
[63] I. Tvaroška,et al. Ab initio molecular orbital calculation of carbohydrate model compounds. 2. Conformational analysis of axial and equatorial 2-methoxytetrahydropyrans , 1994 .
[64] N. L. Allinger,et al. Molecular Mechanics (MM3). Calculations of Furan, Vinyl Ethers, and Related Compounds , 1993 .
[65] Norman L. Allinger,et al. A molecular mechanics force field (MM3) for alcohols and ethers , 1990 .
[66] Structure and biosynthesis of prokaryotic glycoproteins. , 1988, Biochimie.
[67] J. V. Hunt,et al. Oxidative alterations in the experimental glycation model of diabetes mellitus are due to protein-glucose adduct oxidation. Some fundamental differences in proposed mechanisms of glucose oxidation and oxidant production. , 1993, The Biochemical journal.
[68] A. Aabloo,et al. Miniature crystal models of cellulose polymorphs and other carbohydrates. , 1993, International journal of biological macromolecules.
[69] O. Runquist,et al. Conformational analysis of some 2-alkoxytetrahydropyrans , 1968 .
[70] C. S. Ewig,et al. Ab Initio computed molecular structures and energies of the conformers of glucose , 1992 .
[71] Influence of polar medium on the anomeric effect.: Quantum chemical study using the ab initio continuum model , 1991 .
[72] L. Poppe,et al. The rigidity of sucrose : just an illusion ? , 1992 .
[73] F M Richards,et al. Areas, volumes, packing and protein structure. , 1977, Annual review of biophysics and bioengineering.
[74] J. Vliegenthart,et al. A 1H-NMR and MD study of intramolecular hydrogen bonds in methyl β-cellobioside , 1992 .
[75] Donald G. Truhlar,et al. Quantum Chemical Conformational Analysis of 1,2-Ethanediol: Correlation and Solvation Effects on the Tendency To Form Internal Hydrogen Bonds in the Gas Phase and in Aqueous Solution , 1994 .
[76] Norman L. Allinger,et al. Molecular mechanics. The MM3 force field for hydrocarbons. 1 , 1989 .
[77] R. Bartlett,et al. A full coupled‐cluster singles and doubles model: The inclusion of disconnected triples , 1982 .
[78] J. Phillip Bowen,et al. An ab initio study (6-31G*) of transition states in glycoside hydrolysis based on axial and equatorial 2-methoxytetrahydropyrans , 1991 .
[79] Jan Kroon,et al. Solvent effect on the conformation of the hydroxymethyl group established by molecular dynamics simulations of methyl‐β‐D‐glucoside in water , 1990 .
[80] N. Yasuoka,et al. The crystal and molecular structure of a 3:2 mixture of laminarabiose and O-α-d-glucopyranosyl-(1→3)-β-d-glucopyranose , 1977 .
[81] Warren J. Hehre,et al. AB INITIO Molecular Orbital Theory , 1986 .
[82] David J. Giesen,et al. A SEMIEMPIRICAL QUANTUM MECHANICAL SOLVATION MODEL FOR SOLVATION FREE ENERGIES IN ALL ALKANE SOLVENTS , 1995 .
[83] Cornelis Altona,et al. The anomeric effect: Ab‐initio studies on molecules of the type XCH2OCH3 , 1990 .
[84] S. Angyal. Conformational analysis in carbohydrate chemistry. I. Conformational free energies. The conformations and α : β ratios of aldopyranoses in aqueous solution , 1968 .
[85] A. French,et al. AB INITIO-MIA AND MOLECULAR MECHANICS STUDIES OF THE DISTORTED SUCROSE LINKAGE OF RAFFINOSE , 1994 .
[86] J. Pople,et al. Self—Consistent Molecular Orbital Methods. XII. Further Extensions of Gaussian—Type Basis Sets for Use in Molecular Orbital Studies of Organic Molecules , 1972 .
[87] M. Márquez,et al. The energy components of the anomeric effect for 2-methoxytetrahydropyran. An experimental comparison of the gas phase and solutions , 1994 .
[88] G. A. Jeffrey,et al. The application of ab initio molecular orbital theory to structural moieties of carbohydrates , 1974 .
[89] S. J. Angyal,et al. The Composition and Conformation of Sugars in Solution , 1969 .
[90] Norman L. Allinger,et al. Directional hydrogen bonding in the MM3 force field. I , 1994 .
[91] P. Kollman,et al. Comparison of ab initio, semiempirical, and molecular mechanics calculations for the conformational analysis of ring systems , 1992 .
[92] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[93] B. Lee,et al. The interpretation of protein structures: estimation of static accessibility. , 1971, Journal of molecular biology.
[94] G. Thatcher. The Anomeric effect and associated stereoelectronic effects , 1993 .
[95] I. Tvaroška,et al. Ab Initio Molecular Orbital Calculation on Carbohydrate Model Compounds. 1. The Anomeric Effect in Fluoro and Chloro Derivatives of Tetrahydropyran , 1994 .
[96] U. Salzner,et al. Generalized anomeric effects and hyperconjugation in CH2(OH)2, CH2(SH)2, CH2(SeH)2, and CH2(TeH)2 , 1993 .
[97] A. J. Kirby,et al. The Anomeric Effect and Related Stereoelectronic Effects at Oxygen , 1982 .
[98] George P. Ford,et al. New approach to the rapid semiempirical calculation of molecular electrostatic potentials based on the am1 wave function: Comparison with ab initio hf/6‐31g* results , 1993, J. Comput. Chem..
[99] Donald G. Truhlar,et al. Systematic study of basis set superposition errors in the calculated interaction energy of two HF molecules , 1985 .
[100] L. Lerner,et al. Observation of hydroxyl protons of sucrose in aqueous solution: no evidence for persistent intramolecular hydrogen bonds , 1992 .
[101] K. Hirotsu,et al. The Crystal and Molecular Structure of -Lactose , 1974 .
[102] David J. Giesen,et al. Class IV charge models: A new semiempirical approach in quantum chemistry , 1995, J. Comput. Aided Mol. Des..
[103] C. Cramer,et al. General parameterized SCF model for free energies of solvation in aqueous solution , 1991 .
[104] J. Brady,et al. A revised potential-energy surface for molecular mechanics studies of carbohydrates. , 1988, Carbohydrate research.
[105] David J. Giesen,et al. General Semiempirical Quantum Mechanical Solvation Model for Nonpolar Solvation Free Energies. n-Hexadecane , 1995 .
[106] Kenneth M. Merz,et al. Study of hydrogen bonding interactions relevant to biomolecular structure and function , 1992 .
[107] G. A. Jeffrey,et al. Crystal Structure of Glucosamine Hydrobromide , 1939, Nature.
[108] Robert B. Hermann,et al. Theory of hydrophobic bonding. II. Correlation of hydrocarbon solubility in water with solvent cavity surface area , 1972 .
[109] R. Zhbankov. Vibrational spectra and structure of mono- and polysaccharides , 1992 .
[110] R. E. Reeves. The Shape of Pyranoside Rings , 1950 .
[111] T. H. Dunning. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen , 1989 .
[112] D. Cremer,et al. General definition of ring puckering coordinates , 1975 .
[113] Donald G. Truhlar,et al. Quantum Chemical Conformational Analysis of Glucose in Aqueous Solution , 1993 .