Extremely low genetic variation in endangered Tatra chamois and evidence for hybridization with an introduced Alpine population

[1]  G. Luikart,et al.  BOTTLENECK : A Computer Program for Detecting Recent Reductions in the Effective Population Size Using Allele Frequency Data , 2017 .

[2]  G. Luikart,et al.  Effects of Overlapping Generations on Linkage Disequilibrium Estimates of Effective Population Size , 2014, Genetics.

[3]  J. Wang,et al.  Marker‐based estimates of relatedness and inbreeding coefficients: an assessment of current methods , 2014, Journal of evolutionary biology.

[4]  G. M. Macbeth,et al.  NeEstimator v2: re‐implementation of software for the estimation of contemporary effective population size (Ne) from genetic data , 2014, Molecular ecology resources.

[5]  P. Hedrick Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation , 2013, Molecular ecology.

[6]  P. Trontelj,et al.  Genetic data confirm critical status of the reintroduced Dinaric population of Eurasian lynx , 2013, Conservation Genetics.

[7]  J. Bryja,et al.  Population genetics of chamois in the contact zone between the Alps and the Dinaric Mountains: uncovering the role of habitat fragmentation and past management , 2013, Conservation Genetics.

[8]  P. Hájková,et al.  Chamois introductions to Central Europe and New Zealand , 2012, Folia Zoologica.

[9]  S. Lavín,et al.  Polymorphisms at MHC class II DRB1 exon 2 locus in Pyrenean chamois (Rupicapra pyrenaica pyrenaica). , 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[10]  E. Wikramanayake,et al.  Conservation and climate change: Assessing the vulnerability of snow leopard habitat to treeline shift in the Himalaya , 2012 .

[11]  D. Coltman,et al.  (Lack of) genetic diversity in immune genes predates glacial isolation in the North American mountain goat (Oreamnos americanus). , 2012, The Journal of heredity.

[12]  Isabelle Olivieri,et al.  Monitoring adaptive genetic responses to environmental change , 2012, Molecular ecology.

[13]  D. Morris,et al.  Sex-specific selection for MHC variability in Alpine chamois , 2012, BMC Evolutionary Biology.

[14]  L. Waits,et al.  Monitoring the effective population size of a brown bear (Ursus arctos) population using new single‐sample approaches , 2012, Molecular ecology.

[15]  Theunis Piersma,et al.  The interplay between habitat availability and population differentiation , 2012 .

[16]  B. vonHoldt,et al.  STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method , 2012, Conservation Genetics Resources.

[17]  Michele R. Dudash,et al.  Predicting the Probability of Outbreeding Depression , 2011, Conservation biology : the journal of the Society for Conservation Biology.

[18]  J. Piálek,et al.  Genetic structure and contrasting selection pattern at two major histocompatibility complex genes in wild house mouse populations , 2011, Heredity.

[19]  L. Corlatti,et al.  The conservation of the chamois Rupicapra spp. , 2011 .

[20]  P. Hájková,et al.  Development of multiplex microsatellite sets for noninvasive population genetic study of the endangered Tatra chamois , 2011, Folia Zoologica.

[21]  Jinliang Wang coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients , 2011, Molecular ecology resources.

[22]  J. Ragle,et al.  IUCN Red List of Threatened Species , 2010 .

[23]  Lewis G. Spurgin,et al.  How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings , 2010, Proceedings of the Royal Society B: Biological Sciences.

[24]  R. Waples,et al.  Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution , 2009, Evolutionary applications.

[25]  W. Babik,et al.  Collaboration for Environmental Evidence Does Reduced Mhc Diversity Decrease Viability of Vertebrate Populations? Draft Review Report , 2009 .

[26]  S. Hammer,et al.  Integrating phylogeographic patterns of microsatellite and mtDNA divergence to infer the evolutionary history of chamois (genus Rupicapra) , 2010, BMC Evolutionary Biology.

[27]  G. Bertorelle,et al.  The genetic impact of translocations and habitat fragmentation in chamois (Rupicapra) spp. , 2009, The Journal of heredity.

[28]  F. Suchentrunk,et al.  Cytochrome b phylogeography of chamois (Rupicapra spp.). Population contractions, expansions and hybridizations governed the diversification of the genus. , 2008, The Journal of heredity.

[29]  Jukka Corander,et al.  Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations , 2008, BMC Bioinformatics.

[30]  G. Bertorelle,et al.  Disentangling the effects of recombination, selection, and demography on the genetic variation at a major histocompatibility complex class II gene in the alpine chamois , 2008, Molecular ecology.

[31]  Jukka Corander,et al.  Bayesian spatial modeling of genetic population structure , 2008, Comput. Stat..

[32]  P. Bačkor,et al.  Restitution Tatra chamois [Rupicapra rupicapra tatrica Blahout 1971] to the Nizke Tatry Mts [Central Slovakia] , 2008 .

[33]  Noah A. Rosenberg,et al.  CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure , 2007, Bioinform..

[34]  Jinliang Wang,et al.  Triadic IBD coefficients and applications to estimating pairwise relatedness. , 2007, Genetical research.

[35]  M. Schaub,et al.  Spreading free-riding snow sports represent a novel serious threat for wildlife , 2007, Proceedings of the Royal Society B: Biological Sciences.

[36]  L. Rossi,et al.  Descriptive epidemiology of a scabies epidemic in chamois in the Dolomite Alps, Italy , 2007, European Journal of Wildlife Research.

[37]  E. Nielsen,et al.  hybridlab (version 1.0): a program for generating simulated hybrids from population samples , 2006 .

[38]  P. Smouse,et al.  genalex 6: genetic analysis in Excel. Population genetic software for teaching and research , 2006 .

[39]  R. Waples,et al.  A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci* , 2006, Conservation Genetics.

[40]  W. Durka,et al.  Sequence diversity of the MHC DRB gene in the Eurasian beaver (Castor fiber) , 2005, Molecular ecology.

[41]  R. Frankham Genetics and extinction , 2005 .

[42]  J. Rachlow,et al.  Patterns of Genetic Diversity and Its Loss in Mammalian Populations , 2005 .

[43]  S. Goodman,et al.  Recombination and the origin of sequence diversity in the DRB MHC class II locus in chamois (Rupicapra spp.) , 2005, Immunogenetics.

[44]  M. Galan,et al.  Analysis of major histocompatibility complex class II gene in water voles using capillary electrophoresis‐single stranded conformation polymorphism , 2005 .

[45]  H. Ellegren,et al.  A temporal analysis shows major histocompatibility complex loci in the Scandinavian wolf population are consistent with neutral evolution , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[46]  R. Frankham,et al.  Most species are not driven to extinction before genetic factors impact them. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[47]  S. Goodman,et al.  Sequence analysis of the MHC class II DRB alleles in Alpine chamois (Rupicapra r. rupicapra). , 2004, Developmental and comparative immunology.

[48]  H. Mannen,et al.  Mitochondrial DNA Reveal that Domestic Goat (Capra hircus) are Genetically Affected by Two Subspecies of Bezoar (Capra aegagurus) , 2001, Biochemical Genetics.

[49]  Xavier Messeguer,et al.  DnaSP, DNA polymorphism analyses by the coalescent and other methods , 2003, Bioinform..

[50]  N. Rosenberg distruct: a program for the graphical display of population structure , 2003 .

[51]  M. Stephens,et al.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.

[52]  B. Milligan,et al.  Maximum-likelihood estimation of relatedness. , 2003, Genetics.

[53]  Bruce Rannala,et al.  Bayesian inference of recent migration rates using multilocus genotypes. , 2003, Genetics.

[54]  A. Domínguez,et al.  Phylogeography of chamois (Rupicapra spp.) inferred from microsatellites. , 2002, Molecular phylogenetics and evolution.

[55]  Nathaniel Valière gimlet: a computer program for analysing genetic individual identification data , 2002 .

[56]  John D. Storey A direct approach to false discovery rates , 2002 .

[57]  L. Keller,et al.  Inbreeding effects in wild populations. , 2002 .

[58]  E. Thompson,et al.  A model-based method for identifying species hybrids using multilocus genetic data. , 2002, Genetics.

[59]  Pierre Berthier,et al.  gemini: software for testing the effects of genotyping errors and multitubes approach for individual identification , 2002 .

[60]  F. Allendorf,et al.  The problems with hybrids: setting conservation guidelines , 2001 .

[61]  Karen E. Chambers,et al.  Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus) , 2001, Molecular ecology.

[62]  J. Garza,et al.  Detection of reduction in population size using data from microsatellite loci , 2001, Molecular ecology.

[63]  J. Goudet FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Updated from Goudet (1995) , 2001 .

[64]  G. Luikart,et al.  Computer note. BOTTLENECK: a computer program for detecting recent reductions in the effective size using allele frequency data , 1999 .

[65]  A. Loison,et al.  Subpopulation Structure and Dispersal in Two Populations of Chamois , 1999 .

[66]  H. Bandelt,et al.  Median-joining networks for inferring intraspecific phylogenies. , 1999, Molecular biology and evolution.

[67]  E. Douzery,et al.  The mitochondrial control region of Cervidae: evolutionary patterns and phylogenetic content. , 1997, Molecular biology and evolution.

[68]  D. Simberloff,et al.  Extinction by hybridization and introgression , 1996 .

[69]  P Taberlet,et al.  Reliable genotyping of samples with very low DNA quantities using PCR. , 1996, Nucleic acids research.

[70]  F. Bonhomme,et al.  GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. , 1996 .

[71]  François Rousset,et al.  GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism , 1995 .

[72]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[73]  Z. Hubálek,et al.  Non-metrical variation and divergence between autochthonous and introduced populations of chamois (Rupicapra rupucapra) , 1990 .

[74]  B. Weir,et al.  ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.

[75]  P. Greenwood Mating systems, philopatry and dispersal in birds and mammals , 1980, Animal Behaviour.