Evaluation and Properties of the Budding Yeast Phosphoproteome
暂无分享,去创建一个
Kathryn S. Lilley | Stephen G. Oliver | Grigoris D. Amoutzias | Yves Van de Peer | S. Oliver | Y. van de Peer | K. Lilley | G. Amoutzias | Ying He | Ying He | Y. Van de Peer
[1] Ivan Mijakovic,et al. MATERIALS AND METHODS , 1981, Green Corrosion Inhibitors: Reviews and Applications.
[2] Ruedi Aebersold,et al. PhosphoPep—a database of protein phosphorylation sites in model organisms , 2008, Nature Biotechnology.
[3] M. Mann,et al. The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins , 2008, Proteomics.
[4] R. Schekman,et al. Sec16p potentiates the action of COPII proteins to bud transport vesicles , 2002, The Journal of cell biology.
[5] P. Bork,et al. Systematic Discovery of In Vivo Phosphorylation Networks , 2007, Cell.
[6] M. Bibb,et al. Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and high‐accuracy mass spectrometry , 2010, Proteomics.
[7] Edward L Huttlin,et al. Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes* , 2011, Molecular & Cellular Proteomics.
[8] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[9] Samuel H. Payne,et al. A Multidimensional Chromatography Technology for In-depth Phosphoproteome Analysis*S , 2008, Molecular & Cellular Proteomics.
[10] C. Landry,et al. Weak functional constraints on phosphoproteomes. , 2009, Trends in genetics : TIG.
[11] Jörg Stülke,et al. The Phosphoproteome of the Minimal Bacterium Mycoplasma pneumoniae , 2010, Molecular & Cellular Proteomics.
[12] Stephen G Oliver,et al. Posttranslational regulation impacts the fate of duplicated genes , 2010, Proceedings of the National Academy of Sciences.
[13] E. O’Shea,et al. Quantification of protein half-lives in the budding yeast proteome , 2006, Proceedings of the National Academy of Sciences.
[14] R. Aebersold,et al. Mass spectrometry-based proteomics , 2003, Nature.
[15] Bruce Stillman,et al. Deciphering Protein Kinase Specificity through Large-scale Analysis of Materials Supplemental Deciphering Protein Kinase Specificity through Large-scale Analysis of Yeast Phosphorylation Site Motifs , 2010 .
[16] Florian Gnad,et al. High‐accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast , 2009, Proteomics.
[17] Martin Kuiper,et al. BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks , 2005, Bioinform..
[18] G. Lienhard,et al. Non-functional phosphorylations? , 2008, Trends in biochemical sciences.
[19] Ruedi Aebersold,et al. Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. , 2009, Genes & development.
[20] M. Mann,et al. Quantitative Phosphoproteomics Applied to the Yeast Pheromone Signaling Pathway*S , 2005, Molecular & Cellular Proteomics.
[21] Masaru Tomita,et al. Integrative Features of the Yeast Phosphoproteome and Protein–Protein Interaction Map , 2011, PLoS Comput. Biol..
[22] S. Gygi,et al. Global Analysis of Cdk1 Substrate Phosphorylation Sites Provides Insights into Evolution , 2009, Science.
[23] Qing‐Yu He,et al. Phosphoproteomic analysis reveals the multiple roles of phosphorylation in pathogenic bacterium Streptococcus pneumoniae. , 2010, Journal of proteome research.
[24] Richard Durbin,et al. Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites , 2007, Proceedings of the National Academy of Sciences.
[25] J. Gunawardena. Multisite protein phosphorylation makes a good threshold but can be a poor switch. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[26] S. Teichmann,et al. Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation , 2008, Science.
[27] George M. Church,et al. Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases , 2010, Proceedings of the National Academy of Sciences.
[28] Ronald W. Davis,et al. Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.
[29] J. Derisi,et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise , 2006, Nature.
[30] Andrew Emili,et al. In silico proteome analysis to facilitate proteomics experiments using mass spectrometry , 2003, Proteome Science.
[31] Tony Pawson,et al. Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication , 2001, Nature.
[32] Mike Tyers,et al. PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae , 2010, Database J. Biol. Databases Curation.
[33] Nikolaj Blom,et al. NetPhosYeast: prediction of protein phosphorylation sites in yeast , 2007, Bioinform..
[34] Ruedi Aebersold,et al. Reproducible isolation of distinct, overlapping segments of the phosphoproteome , 2007, Nature Methods.
[35] Masaru Tomita,et al. In Silico Analysis of Phosphoproteome Data Suggests a Rich-get-richer Process of Phosphosite Accumulation over Evolution*S , 2009, Molecular & Cellular Proteomics.
[36] M. Tomita,et al. Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non‐pathogenic Pseudomonas species , 2009, Proteomics.
[37] M. Mann,et al. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast , 2008, Nature.
[38] Michal Linial,et al. Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data , 2010, Biology Direct.
[39] Jesper V Olsen,et al. Global analysis of the yeast osmotic stress response by quantitative proteomics. , 2009, Molecular bioSystems.
[40] Kevin P. Byrne,et al. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. , 2005, Genome research.
[41] M. Madan Babu,et al. Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions. , 2009, BMC systems biology.
[42] Albert Sickmann,et al. The proteome of Saccharomyces cerevisiae mitochondria , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[43] Mark Gerstein,et al. Measuring the Evolutionary Rewiring of Biological Networks , 2011, PLoS Comput. Biol..
[44] N. Pfanner,et al. Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics. , 2006, Journal of proteome research.
[45] M. Tyers,et al. Stratus Not Altocumulus: A New View of the Yeast Protein Interaction Network , 2006, PLoS biology.
[46] M. Gerstein,et al. Global analysis of protein phosphorylation in yeast , 2005, Nature.
[47] Gary D Bader,et al. The Genetic Landscape of a Cell , 2010, Science.
[48] K. Khoo,et al. Phosphoproteomics of Klebsiella pneumoniae NTUH-K2044 Reveals a Tight Link between Tyrosine Phosphorylation and Virulence* , 2009, Molecular & Cellular Proteomics.
[49] W. Lim,et al. Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species , 2009, PLoS biology.
[50] Scott A Gerber,et al. Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae. , 2007, Journal of proteome research.
[51] Ronald W. Davis,et al. Systematic screen for human disease genes in yeast , 2002, Nature Genetics.
[52] Zoran Obradovic,et al. Length-dependent prediction of protein intrinsic disorder , 2006, BMC Bioinformatics.
[53] J. Gsponer. Transcript Synthesis to Protein Degradation Tight Regulation of Unstructured Proteins: From , 2010 .
[54] Albert Sickmann,et al. Profiling Phosphoproteins of Yeast Mitochondria Reveals a Role of Phosphorylation in Assembly of the ATP Synthase*S , 2007, Molecular & Cellular Proteomics.
[55] Wendell A. Lim,et al. Correction: Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species , 2009, PLoS Biology.
[56] T. Hunter,et al. Evolution of protein kinase signaling from yeast to man. , 2002, Trends in biochemical sciences.
[57] Steven P Gygi,et al. A proteomics approach to understanding protein ubiquitination , 2003, Nature Biotechnology.
[58] E. O’Shea,et al. Global analysis of protein expression in yeast , 2003, Nature.
[59] L. Iakoucheva,et al. The importance of intrinsic disorder for protein phosphorylation. , 2004, Nucleic acids research.
[60] Ivan Mijakovic,et al. The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis*S , 2007, Molecular & Cellular Proteomics.
[61] W. Lim,et al. Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase , 2011, Proceedings of the National Academy of Sciences.
[62] N. Friedman,et al. Natural history and evolutionary principles of gene duplication in fungi , 2007, Nature.
[63] Nicola J. Rinaldi,et al. Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.
[64] Lewis Y. Geer,et al. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry , 2007, Proceedings of the National Academy of Sciences.