Modification of Escherichia coli single-stranded DNA binding protein with gold nanoparticles for electrochemical detection of DNA hybridization

The unique binding event between Escherichia coli single-stranded DNA binding protein (SSB) and single-stranded oligonucleotides conjugated to gold (Au) nanoparticles is utilized for the electrochemical detection of DNA hybridization. SSB was attached onto a self-assembled monolayer (SAM) of single-stranded oligonucleotide modified Au nanoparticle, and the resulting Au-tagged SSB was used as the hybridization label. Changes in the Au oxidation signal was monitored upon binding of Au tagged SSB to probe and hybrid on the electrode surface. The amplified oxidation signal of Au nanoparticles provided a detection limit of 2.17 pM target DNA, which can be applied to genetic diagnosis applications. This work presented here has important implications with regard to combining a biological binding event between a protein and DNA with a solid transducer and metal nanoparticles.

[1]  Robert M. Corn,et al.  A Multistep Chemical Modification Procedure To Create DNA Arrays on Gold Surfaces for the Study of Protein−DNA Interactions with Surface Plasmon Resonance Imaging , 1999 .

[2]  J. E. Mattson,et al.  A Group-IV Ferromagnetic Semiconductor: MnxGe1−x , 2002, Science.

[3]  C. Niemeyer Bioorganic applications of semisynthetic DNA-protein conjugates. , 2001, Chemistry.

[4]  Kagan Kerman,et al.  Electrochemical genosensor based on colloidal gold nanoparticles for the detection of Factor V Leiden mutation using disposable pencil graphite electrodes. , 2003, Analytical chemistry.

[5]  J. Justin Gooding,et al.  Voltammetric determination of DNA hybridization using methylene blue and self-assembled alkanethiol monolayer on gold electrodes , 2002 .

[6]  W. D. Geoghegan,et al.  Adsorption of horseradish peroxidase, ovomucoid and anti-immunoglobulin to colloidal gold for the indirect detection of concanavalin A, wheat germ agglutinin and goat anti-human immunoglobulin G on cell surfaces at the electron microscopic level: a new method, theory and application. , 1977, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[7]  Kagan Kerman,et al.  Recent trends in electrochemical DNA biosensor technology , 2004 .

[8]  C. Mirkin,et al.  Scanometric DNA array detection with nanoparticle probes. , 2000, Science.

[9]  Giovanna Marrazza,et al.  Coupling of an indicator-free electrochemical DNA biosensor with polymerase chain reaction for the detection of DNA sequences related to the apolipoprotein E , 2002 .

[10]  T. Lohman,et al.  Co-operative binding of Escherichia coli SSB tetramers to single-stranded DNA in the (SSB)35 binding mode. , 1994, Journal of molecular biology.

[11]  A. Kozlov,et al.  Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer. , 2002, Biochemistry.

[12]  Ronen Polsky,et al.  Magnetically-induced solid-state electrochemical detection of DNA hybridization. , 2002, Journal of the American Chemical Society.

[13]  A. Kozlov,et al.  Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules. , 2002, Biochemistry.

[14]  C. Niemeyer REVIEW Nanoparticles, Proteins, and Nucleic Acids: Biotechnology Meets Materials Science , 2022 .

[15]  Jun Wang,et al.  Amplified voltammetric detection of DNA hybridization via oxidation of ferrocene caps on gold nanoparticle/streptavidin conjugates. , 2003, Analytical chemistry.

[16]  T. Lohman,et al.  Escherichia coli single-strand binding protein forms multiple, distinct complexes with single-stranded DNA. , 1986, Biochemistry.

[17]  C. Mirkin,et al.  Array-Based Electrical Detection of DNA with Nanoparticle Probes , 2002, Science.

[18]  J. Justin Gooding,et al.  Characterisation of gold electrodes modified with self-assembled monolayers of l-cysteine for the adsorptive stripping analysis of copper , 2001 .

[19]  Guodong Liu,et al.  Electrochemical coding technology for simultaneous detection of multiple DNA targets. , 2003, Journal of the American Chemical Society.

[20]  Kenji Yokoyama,et al.  Design of peptide that recognizes double-stranded DNA. , 2003, Analytical sciences : the international journal of the Japan Society for Analytical Chemistry.

[21]  T. Lohman,et al.  Cooperative binding of polyamines induces the Escherichia coli single-strand binding protein-DNA binding mode transitions. , 1992, Biochemistry.

[22]  J. W. Chase,et al.  Single-stranded DNA binding proteins required for DNA replication. , 1986, Annual review of biochemistry.

[23]  T. Lohman,et al.  Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities. , 1994, Annual review of biochemistry.

[24]  C. Mirkin,et al.  Materials chemistry: Semiconductors meet biology , 2000, Nature.

[25]  E. Katz,et al.  Nanoparticle arrays on surfaces for electronic, optical, and sensor applications. , 2000, Chemphyschem : a European journal of chemical physics and physical chemistry.

[26]  A. Karyakin,et al.  Electrochemical transducers based on surfactant bilayers for the direct detection of affinity interactions. , 2003, Biosensors & bioelectronics.

[27]  T. Lohman,et al.  E. coli single strand binding protein: a new look at helix-destabilizing proteins. , 1988, Trends in biochemical sciences.

[28]  Jörg Peplies,et al.  Covalent DNA-Streptavidin Conjugates as Building Blocks for Novel Biometallic Nanostructures. , 1998, Angewandte Chemie.

[29]  C. Mirkin,et al.  A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles. , 2000, Analytical chemistry.

[30]  T. A. Taton,et al.  Metal nanoparticles as labels for heterogeneous, chip-based DNA detection , 2003, Nanotechnology.

[31]  Christof M. Niemeyer,et al.  DNA-Directed Functionalization of Colloidal Gold with Proteins This work was supported by Deutsche Forschungsgemeinschaft and Fonds der Chemischen Industrie. We thank Prof. D. Blohm for helpful discussions and generous support. , 2001, Angewandte Chemie.

[32]  E. Hall,et al.  Platinum-catalyzed enzyme electrodes immobilized on gold using self-assembled layers. , 1998, Analytical chemistry.

[33]  Jinghong Li,et al.  Electrochemical detection of DNA immobilized on gold colloid particles modified self-assembled monolayer electrode with silver nanoparticle label. , 2003, Journal of pharmaceutical and biomedical analysis.

[34]  Christof M. Niemeyer Priv.-Doz.,et al.  DNA-Directed Functionalization of Colloidal Gold with Proteins† , 2001 .

[35]  J. Storhoff,et al.  Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. , 1997, Science.