Apparent two-state tendamistat folding is a sequential process along a defined route.

The small all-beta-sheet protein tendamistat folds and unfolds rapidly in apparent two-state reactions. Kinetic measurements of two tendamistat variants under various solvent conditions reveal, however, that folding occurs in at least two sequential steps through a metastable obligatory intermediate. Depending on the solvent conditions either step can become rate limiting. The activation parameters indicate that the first step represents an enthalpic barrier whereas the second step is an entropic barrier at 25 degrees C. Our results suggest that initial non-specific collapse precedes formation of native secondary and tertiary structure in tendamistat folding. This points at a distinct route in tendamistat folding and indicates that partially folded metastable intermediates might play an important role in the mechanism of apparent two-state folding.

[1]  R. Sauer,et al.  Nonlinear free energy relationships in Arc repressor unfolding imply the existence of unstable, native-like folding intermediates. , 1996, Biochemistry.

[2]  H. Roder,et al.  Kinetic evidence for folding and unfolding intermediates in staphylococcal nuclease. , 1997, Biochemistry.

[3]  R. L. Baldwin,et al.  How Hofmeister ion interactions affect protein stability. , 1996, Biophysical journal.

[4]  C. Bamford,et al.  Comprehensive Chemical Kinetics , 1976 .

[5]  C. Pace,et al.  Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding , 1995, Protein science : a publication of the Protein Society.

[6]  S Doniach,et al.  Characterization of transient intermediates in lysozyme folding with time-resolved small-angle X-ray scattering. , 1999, Journal of molecular biology.

[7]  S. Jackson,et al.  How do small single-domain proteins fold? , 1998, Folding & design.

[8]  A. Fersht,et al.  The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding. , 1998, Journal of molecular biology.

[9]  T. Kiefhaber,et al.  The speed limit for protein folding measured by triplet-triplet energy transfer. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[10]  H. Kramers Brownian motion in a field of force and the diffusion model of chemical reactions , 1940 .

[11]  C. Saudan,et al.  Denaturant-induced movement of the transition state of protein folding revealed by high-pressure stopped-flow measurements. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[12]  T. Kiefhaber,et al.  Effect of preformed correct tertiary interactions on rapid two-state tendamistat folding: evidence for hairpins as initiation sites for beta-sheet formation. , 1997, Biochemistry.

[13]  C. Dobson Unfolded proteins, compact states and molten globules: Current Opinion in Structural Biology 1992, 2:6–12 , 1992 .

[14]  K Wüthrich,et al.  Determination of the complete three-dimensional structure of the alpha-amylase inhibitor tendamistat in aqueous solution by nuclear magnetic resonance and distance geometry. , 1988, Journal of molecular biology.

[15]  Shoji Takada,et al.  Variational Theory for Site Resolved Protein Folding Free Energy Surfaces , 1998, cond-mat/9805366.

[16]  T. Kiefhaber,et al.  Direct measurement of nucleation and growth rates in lysozyme folding. , 1997, Biochemistry.

[17]  M Levitt,et al.  Simulating the minimum core for hydrophobic collapse in globular proteins , 1997, Protein science : a publication of the Protein Society.

[18]  P. V. von Hippel,et al.  On the conformational stability of globular proteins. The effects of various electrolytes and nonelectrolytes on the thermal ribonuclease transition. , 1965, The Journal of biological chemistry.

[19]  Homer Jacobson,et al.  Intramolecular Reaction in Polycondensations. I. The Theory of Linear Systems , 1950 .

[20]  Sebastian Doniach Statistical mechanics, protein structure, and protein substrate interactions , 1994 .

[21]  T. Kiefhaber,et al.  Kinetic coupling between protein folding and prolyl isomerization. I. Theoretical models. , 1992, Journal of molecular biology.

[22]  R. C. Weast Handbook of chemistry and physics , 1973 .

[23]  Z. G. Szabó,et al.  Kinetic Characterization of Complex Reaction Systems , 1969 .

[24]  T. Kiefhaber,et al.  Intermediates can accelerate protein folding. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[25]  D. Thirumalai Theoretical Perspectives on In Vitro and In Vivo Protein Folding , 1994 .

[26]  P. S. Kim,et al.  Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. , 1982, Annual review of biochemistry.

[27]  H. Roder,et al.  Evidence for barrier-limited protein folding kinetics on the microsecond time scale , 1998, Nature Structural Biology.

[28]  K. Dill,et al.  Transition states and folding dynamics of proteins and heteropolymers , 1994 .

[29]  T. Kiefhaber,et al.  Folding of the disulfide-bonded beta-sheet protein tendamistat: rapid two-state folding without hydrophobic collapse. , 1997, Journal of molecular biology.

[30]  A. Fersht,et al.  The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. , 1992, Journal of molecular biology.

[31]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[32]  M. Neeb,et al.  High yield fermentation and purification of Tendamistat disulphide analogues secreted by Streptomyces lividans , 1993, Applied Microbiology and Biotechnology.

[33]  R. Huber,et al.  Crystal structure determination, refinement and the molecular model of the alpha-amylase inhibitor Hoe-467A. , 1986, Journal of molecular biology.

[34]  T. Creighton Disulphide bonds and protein stability , 1988, BioEssays : news and reviews in molecular, cellular and developmental biology.

[35]  J. Onuchic,et al.  Navigating the folding routes , 1995, Science.

[36]  M. Oliveberg,et al.  High-energy channeling in protein folding. , 1997, Biochemistry.

[37]  H. Kessler,et al.  Structure and dynamic properties of the single disulfide‐deficient α‐amylase inhibitor [C45A/C73A]tendamistat: An NMR study , 1998, Proteins.

[38]  P. S. Kim,et al.  Intermediates in the folding reactions of small proteins. , 1990, Annual review of biochemistry.

[39]  H. Hinz,et al.  Thermodynamics of unfolding of the alpha-amylase inhibitor tendamistat. Correlations between accessible surface area and heat capacity. , 1992, Journal of molecular biology.