Biomedical Ontology Matching Using the AgreementMaker System

The AgreementMaker ontology matching system, which has been developed in the ADVIS Laboratory at the University of Illinois at Chicago, has been deployed to dozens of users in a variety of domains. In this demo we concentrate on research advances that make the AgreementMaker system particularly suitable for biomedical applications: (1) An extensible architecture; (2) Automatic combination of the results from matching methods; (3) Integrated matching and evaluation; and (4) Support for external vocabularies. AgreementMaker has recently obtained the best results ever in the OAEI Anatomy Track competition.