TONSILS ARE MAJOR SITES OF PROLONGED SARS-COV-2 INFECTION IN CHILDREN

In the present study, we show that SARS-CoV-2 can infect palatine tonsils and adenoids in children without symptoms of COVID-19, with no history of recent upper airway infection. We studied 48 children undergoing tonsillectomy due to snoring/OSA or recurrent tonsillitis between October 2020 and September 2021. Briefly, nasal cytobrush (NC), nasal wash (NW) and tonsillar tissue fragments obtained at surgery were tested by RT-PCR, immunohistochemistry (IHC), flow cytometry and neutralization assay. We detected the presence of SARS-CoV-2 in at least one specimen tested in 25% of patients (20% in palatine tonsils and 16.27% in adenoids, 10.41% of NC and 6.25% of NW). Importantly, in 2 of the children there was evidence of laboratory-confirmed acute infection 2 and 5 months before surgery. IHC revealed the presence of SARS-CoV-2 nucleoprotein in epithelial surface and in lymphoid cells in both extrafollicular and follicular regions, in adenoids and palatine tonsils. Flow cytometry showed that CD20+ B lymphocytes were the most infected phenotypes by SARS-CoV-2 NP, followed by CD4+ and CD8+ T lymphocytes, and CD14+ macrophages and dendritic cells. Additionally, IF indicated that SARS-CoV-2-infected tonsillar tissues had increased expression of ACE2 and TMPRSS2. NGS sequencing demonstrated the presence of different SARS CoV-2 variants in tonsils from different tissues. SARS-CoV-2 antigen detection was not restricted to tonsils, but was also detected in nasal cells from the olfactory region. In conclusion, palatine tonsils and adenoids are sites of prolonged infection by SARS-CoV-2 in children, even without COVID-19 symptoms.

[1]  S. Pittaluga,et al.  SARS-CoV-2 infection and persistence in the human body and brain at autopsy , 2022, Nature.

[2]  Lu Lu,et al.  The putative mechanism of lymphopenia in COVID-19 patients , 2022, Journal of molecular cell biology.

[3]  S. Whelan,et al.  SARS-CoV-2 productively infects primary human immune system cells in vitro and in COVID-19 patients , 2022, Journal of molecular cell biology.

[4]  H. Nakaya,et al.  Pediatric COVID-19 patients in South Brazil show abundant viral mRNA and strong specific anti-viral responses , 2021, Nature Communications.

[5]  J. Stanford,et al.  Incidence Rates, Household Infection Risk, and Clinical Characteristics of SARS-CoV-2 Infection Among Children and Adults in Utah and New York City, New York. , 2021, JAMA pediatrics.

[6]  O. Pybus,et al.  Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool , 2021, Virus evolution.

[7]  N. Bellei,et al.  Detection of respiratory viruses in primary cholesteatoma tissues , 2021, Journal of medical virology.

[8]  B. Desimmie,et al.  Insights into SARS-CoV-2 Persistence and Its Relevance , 2021, Viruses.

[9]  Yuzhang Wu,et al.  SARS-CoV-2 Induces Lymphocytopenia by Promoting Inflammation and Decimates Secondary Lymphoid Organs , 2021, Frontiers in Immunology.

[10]  Daniel S. Chertow,et al.  SARS-CoV-2 infection of the oral cavity and saliva , 2021, Nature Medicine.

[11]  S. Atkin,et al.  The high prevalence of asymptomatic SARS-CoV-2 infection reveals the silent spread of COVID-19 , 2021, International Journal of Infectious Diseases.

[12]  Keith T. Gagnon,et al.  High throughput nanopore sequencing of SARS-CoV-2 viral genomes from patient samples , 2021, bioRxiv.

[13]  A. Tanuri,et al.  Genomic Characterization of a Novel SARS-CoV-2 Lineage from Rio de Janeiro, Brazil , 2020, Journal of Virology.

[14]  T. Kohlsdorf,et al.  Inflammasomes are activated in response to SARS-CoV-2 infection and are associated with COVID-19 severity in patients , 2020, The Journal of experimental medicine.

[15]  R. Neher,et al.  Nextclade: clade assignment, mutation calling and quality control for viral genomes , 2021, J. Open Source Softw..

[16]  C. Soares,et al.  Screening for SARS‐CoV‐2 antibodies in convalescent plasma in Brazil: Preliminary lessons from a voluntary convalescent donor program , 2020, Transfusion.

[17]  Andrew D Smith,et al.  Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore , 2020, bioRxiv.

[18]  N. Kaminski,et al.  Reduced development of COVID-19 in children reveals molecular checkpoints gating pathogenesis illuminating potential therapeutics , 2020, Proceedings of the National Academy of Sciences.

[19]  Sohan Seth,et al.  Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study , 2020, BMJ.

[20]  L. Ramirez-Avila,et al.  Prevalence of SARS-CoV-2 Infection in Children Without Symptoms of Coronavirus Disease 2019. , 2020, JAMA pediatrics.

[21]  Jian-Piao Cai,et al.  Attenuated Interferon and Proinflammatory Response in SARS-CoV-2–Infected Human Dendritic Cells Is Associated With Viral Antagonism of STAT1 Phosphorylation , 2020, The Journal of infectious diseases.

[22]  J. Greenbaum,et al.  Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals , 2020, Cell.

[23]  N. Curtis,et al.  COVID-19 in Children, Pregnancy and Neonates: A Review of Epidemiologic and Clinical Features , 2020, The Pediatric infectious disease journal.

[24]  Fabian J Theis,et al.  SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes , 2020, Nature Medicine.

[25]  L. Ferreri,et al.  Silent Infection of B and CD8+ T Lymphocytes by Influenza A Virus in Children with Tonsillar Hypertrophy , 2020, Journal of Virology.

[26]  Kai Zhao,et al.  A pneumonia outbreak associated with a new coronavirus of probable bat origin , 2020, Nature.

[27]  T. Puhakka,et al.  Rhinovirus species and tonsillar immune responses , 2019, Clinical and translational allergy.

[28]  Heng Li,et al.  Minimap2: pairwise alignment for nucleotide sequences , 2017, Bioinform..

[29]  K. St. George,et al.  The ubiquity of asymptomatic respiratory viral infections in the tonsils and adenoids of children and their impact on airway obstruction , 2016, International Journal of Pediatric Otorhinolaryngology.

[30]  Daniel Mapleson,et al.  RAMPART: a workflow management system for de novo genome assembly , 2015, Bioinform..

[31]  S. Passos,et al.  Detection of Respiratory Viruses in Nasopharyngeal Swab and Adenoid Tissue from Children Submitted to Adenoidectomy: Pre- and Postoperative Analysis , 2014, International Archives of Otorhinolaryngology.

[32]  L. Lopes,et al.  High Rates of Detection of Respiratory Viruses in Tonsillar Tissues from Children with Chronic Adenotonsillar Disease , 2012, PloS one.