Dynamic MRI-based computer aided diagnostic systems for early detection of kidney transplant rejection: A survey

Early detection of renal transplant rejection is important to implement appropriate medical and immune therapy in patients with transplanted kidneys. In literature, a large number of computer-aided diagnostic (CAD) systems using different image modalities, such as ultrasound (US), magnetic resonance imaging (MRI), computed tomography (CT), and radionuclide imaging, have been proposed for early detection of kidney diseases. A typical CAD system for kidney diagnosis consists of a set of processing steps including: motion correction, segmentation of the kidney and/or its internal structures (e.g., cortex, medulla), construction of agent kinetic curves, functional parameter estimation, diagnosis, and assessment of the kidney status. In this paper, we survey the current state-of-the-art CAD systems that have been developed for kidney disease diagnosis using dynamic MRI. In addition, the paper addresses several challenges that researchers face in developing efficient, fast and reliable CAD systems for the early...

[1]  Arvid Lundervold,et al.  Wavelet-based segmentation of renal compartments in DCE-MRI of human kidney: Initial results in patients and healthy volunteers , 2012, Comput. Medical Imaging Graph..

[2]  A Hasman,et al.  Movement correction of the kidney in dynamic MRI scans using FFT phase difference movement detection , 2001, Journal of magnetic resonance imaging : JMRI.

[3]  Ayman El-Baz,et al.  Application Of Deformable Models For The Detection Of Acute Renal Rejection , 2007 .

[4]  Daniel Rueckert,et al.  Non-rigid registration using higher-order mutual information , 2000, Medical Imaging.

[5]  Puneet Sharma,et al.  Nonrigid registration and classification of the kidneys in 3D dynamic contrast enhanced (DCE) MR images , 2012, Medical Imaging.

[6]  Ayman El-Baz,et al.  2D and 3D Shape Based Segmentation Using Deformable Models , 2005, MICCAI.

[7]  R Kikinis,et al.  Semiautomated ROI analysis in dynamic MR studies. Part I: Image analysis tools for automatic correction of organ displacements. , 1991, Journal of computer assisted tomography.

[8]  A. Levy,et al.  Acute Rejection and Chronic Nephropathy: A Systematic Review of the Literature , 2009, Transplantation.

[9]  Ayman El-Baz,et al.  A Novel Approach for Global Lung Registration Using 3D Markov-Gibbs Appearance Model , 2012, MICCAI.

[10]  Ayman El-Baz,et al.  Early assessment of malignant lung nodules based on the spatial analysis of detected lung nodules , 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

[11]  A. Hasman,et al.  MR renography by semiautomated image analysis: Performance in renal transplant recipients , 2001, Journal of magnetic resonance imaging : JMRI.

[12]  Georgy L. Gimel'farb,et al.  Robust Medical Images Segmentation Using Learned Shape and Appearance Models , 2009, MICCAI.

[13]  Jeong Kon Kim,et al.  Complications of Renal Transplantation , 2007, Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine.

[14]  G Gerig,et al.  Semiautomated ROI analysis in dynamic MR studies. Part II: Application to renal function examination. , 1991, Journal of computer assisted tomography.

[15]  Georgy L. Gimel'farb,et al.  EM Based Approximation of Empirical Distributions with Linear Combinations of Discrete Gaussians , 2007, 2007 IEEE International Conference on Image Processing.

[16]  A.F. Laine,et al.  Four Dimensional MR Image Analysis of Dynamic Renography , 2006, 2006 International Conference of the IEEE Engineering in Medicine and Biology Society.

[17]  Maximilian F Reiser,et al.  MRI-Measurement of Perfusion and Glomerular Filtration in the Human Kidney With a Separable Compartment Model , 2008, Investigative radiology.

[18]  Aly A. Farag,et al.  A kidney segmentation approach from DCE-MRI using level sets , 2008, 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops.

[19]  Ayman El-Baz,et al.  Accurate Automatic Analysis of Cardiac Cine Images , 2012, IEEE Transactions on Biomedical Engineering.

[20]  Sébastien Roujol,et al.  Improvement of MRI‐functional measurement with automatic movement correction in native and transplanted kidneys , 2008, Journal of magnetic resonance imaging : JMRI.

[21]  Ayman El-Baz,et al.  A novel image analysis approach for accurate identification of acute renal rejection , 2008, 2008 15th IEEE International Conference on Image Processing.

[22]  Ying Sun,et al.  Registration and segmentation in perfusion mri: kidneys and hearts , 2004 .

[23]  Olivier Pietquin,et al.  Functional Segmentation of Renal DCE-MRI Sequences Using Vector Quantization Algorithms , 2011, Neural Processing Letters.

[24]  N. Oesingmann,et al.  Functional renal imaging: nonvascular renal disease , 2007, Abdominal Imaging.

[25]  Ayman El-Baz,et al.  A Kidney Segmentation Framework for Dynamic Contrast Enhanced Magnetic Resonance Imaging , 2007 .

[26]  Aly A. Farag,et al.  Precise segmentation of multimodal images , 2006, IEEE Transactions on Image Processing.

[27]  Peter L. Choyke,et al.  Registration of time-series contrast enhanced magnetic resonance images for renography , 2001, Proceedings 14th IEEE Symposium on Computer-Based Medical Systems. CBMS 2001.

[28]  Erlend Hodneland,et al.  In vivo estimation of glomerular filtration in the kidney using DCE-MRI , 2011, 2011 7th International Symposium on Image and Signal Processing and Analysis (ISPA).

[29]  Aly A. Farag,et al.  Graph Cuts Framework for Kidney Segmentation with Prior Shape Constraints , 2007, MICCAI.

[30]  Ayman El-Baz,et al.  Precise Segmentation of 3-D Magnetic Resonance Angiography , 2012, IEEE Transactions on Biomedical Engineering.

[31]  Luigi Landini,et al.  Automatic 2D registration of renal perfusion image sequences by mutual information and adaptive prediction , 2013, Magnetic Resonance Materials in Physics, Biology and Medicine.

[32]  Joe Y. Chang,et al.  Validation of an accelerated ‘demons’ algorithm for deformable image registration in radiation therapy , 2005, Physics in medicine and biology.

[33]  Ayman El-Baz,et al.  Image Analysis of Renal DCE MRI for the Detection of Acute Renal Rejection , 2006, 18th International Conference on Pattern Recognition (ICPR'06).

[34]  Michael Schäfers,et al.  Non-Invasive Diagnosis of Acute Renal Allograft Rejection − Special Focus on Gamma Scintigraphy and Positron Emission Tomography , 2013 .

[35]  Ayman El-Baz,et al.  New Motion Correction Models for Automatic Identification of Renal Transplant Rejection , 2007, MICCAI.

[36]  José M. F. Moura,et al.  Subpixel registration in renal perfusion MR image sequence , 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[37]  Ashraf A. Kassim,et al.  Segmentation of Kidney Cortex in MRI Studies using a Constrained Morphological 3D H-maxima Transform , 2006, 2006 9th International Conference on Control, Automation, Robotics and Vision.

[38]  Klaus D. Tönnies,et al.  Prior Shape Level Set Segmentation on Multistep Generated Probability Maps of MR Datasets for Fully Automatic Kidney Parenchyma Volumetry , 2012, IEEE Transactions on Medical Imaging.

[39]  Elw Eelco Giele Computer methods for semi-automatic MR renogram determination , 2002 .

[40]  Gareth Funka-Lea,et al.  Graph Cuts and Efficient N-D Image Segmentation , 2006, International Journal of Computer Vision.

[41]  Nassir Navab,et al.  Automatic alignment of renal DCE-MRI image series for improvement of quantitative tracer kinetic studies , 2008, SPIE Medical Imaging.

[42]  Yuri Boykov,et al.  Performance of an automated segmentation algorithm for 3D MR renography , 2007, Magnetic resonance in medicine.

[43]  Aly A. Farag,et al.  Appearance Models for Robust Segmentation of Pulmonary Nodules in 3D LDCT Chest Images , 2006, MICCAI.

[44]  José M. F. Moura,et al.  Integrated registration of dynamic renal perfusion MR images , 2004, 2004 International Conference on Image Processing, 2004. ICIP '04..

[45]  Ayman El-Baz,et al.  A framework for the detection of acute renal rejection with dynamic contrast enhanced magnetic resonance imaging , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[46]  Arvid Lundervold,et al.  ssessment of 3 D DCE-MRI of the kidneys using non-rigid image registration nd segmentation of voxel time courses rank , 2009 .

[47]  Ayman El-Baz,et al.  State-of-the-Art Medical Image Registration Methodologies: A Survey , 2011 .

[48]  Ying Sun,et al.  Improving spatiotemporal resolution of USPIO-enhanced dynamic imaging of rat kidneys. , 2003, Magnetic resonance imaging.

[49]  Georgy L. Gimel'farb,et al.  Automatic analysis of 3D low dose CT images for early diagnosis of lung cancer , 2009, Pattern Recognit..

[50]  J. Heaf,et al.  Uses and limitations of renal scintigraphy in renal transplantation monitoring , 2000, European Journal of Nuclear Medicine.

[51]  Tony F. Chan,et al.  Active contours without edges , 2001, IEEE Trans. Image Process..

[52]  Ayman El-Baz,et al.  A new nonrigid registration framework for improved visualization of transmural perfusion gradients on cardiac first-pass perfusion MRI , 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

[53]  H. Frieboes,et al.  A comprehensive non‐invasive framework for automated evaluation of acute renal transplant rejection using DCE‐MRI , 2013, NMR in biomedicine.

[54]  A. Lundervold,et al.  Quantitative assessment of kidney function using dynamic contrast enhanced MRI - steps towards an integrated software prototype , 2009, 2009 Proceedings of 6th International Symposium on Image and Signal Processing and Analysis.

[55]  W Greg Miller,et al.  Recommendations for improving serum creatinine measurement: a report from the Laboratory Working Group of the National Kidney Disease Education Program. , 2006, Clinical chemistry.

[56]  Ayman El-Baz,et al.  Non-invasive Image-Based Approach for Early Detection of Acute Renal Rejection , 2010, MICCAI.

[57]  Ayman El-Baz,et al.  Dynamic Contrast-Enhanced MRI-Based Early Detection of Acute Renal Transplant Rejection , 2013, IEEE Transactions on Medical Imaging.