Ligand-induced conformational capture of a synthetic tetracycline riboswitch revealed by pulse EPR.
暂无分享,去创建一个
Heinz-Jürgen Steinhoff | Sabine Müller | Beatrix Suess | Bettina Appel | H. Steinhoff | B. Suess | J. E. Weigand | Bettina Appel | S. Müller | Dorith Wunnicke | Denise Strohbach | Julia E Weigand | Emiliano Feresin | D. Wunnicke | Emiliano Feresin | D. Strohbach | J. Weigand
[1] Maung Nyan Win,et al. Frameworks for programming biological function through RNA parts and devices. , 2009, Chemistry & biology.
[2] V. DeRose,et al. A distance ruler for RNA using EPR and site-directed spin labeling. , 2004, Chemistry & biology.
[3] T. Logan,et al. Protein dynamics and monomer-monomer interactions in AntR activation by electron paramagnetic resonance and double electron-electron resonance. , 2007, Biochemistry.
[4] S. Diekmann,et al. Distance determination in protein-DNA complexes using fluorescence resonance energy transfer. , 2006, Methods in molecular biology.
[5] K. Hideg,et al. Site-directed spin labeling measurements of nanometer distances in nucleic acids using a sequence-independent nitroxide probe , 2006, Nucleic acids research.
[6] Taekjip Ha,et al. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[7] M. Famulok,et al. Functional Aptamers and Aptazymes in Biotechnology, Diagnostics, and Therapy , 2007 .
[8] Barbara Fink,et al. Conditional gene expression by controlling translation with tetracycline-binding aptamers. , 2003, Nucleic acids research.
[9] Eric J. Sorin,et al. Exploring the helix-coil transition via all-atom equilibrium ensemble simulations. , 2005, Biophysical journal.
[10] S. Müller,et al. 5-(Benzylmercapto)-1H-tetrazole as activator for 2′-O-TBDMS phosphoramidite building blocks in RNA synthesis , 2002 .
[11] L. Gold,et al. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. , 1990, Science.
[12] B. Epe,et al. Competition between tetracycline and tRNA at both P and A sites of the ribosome of Escherichia coli , 1987, FEBS letters.
[13] J. Szostak,et al. In vitro selection of RNA molecules that bind specific ligands , 1990, Nature.
[14] Gerrit Groenhof,et al. GROMACS: Fast, flexible, and free , 2005, J. Comput. Chem..
[15] E Westhof,et al. Structural Basis of Ligand Discrimination by Two Related RNA Aptamers Resolved by NMR Spectroscopy , 1996, Science.
[16] Beatrix Suess,et al. Aptamers and riboswitches: perspectives in biotechnology , 2009, Applied Microbiology and Biotechnology.
[17] S. Sigurdsson,et al. Nanometer distance measurements on RNA using PELDOR. , 2003, Journal of the American Chemical Society.
[18] David S. Cafiso,et al. Identifying conformational changes with site-directed spin labeling , 2000, Nature Structural Biology.
[19] R. Breaker,et al. The structural and functional diversity of metabolite-binding riboswitches. , 2009, Annual review of biochemistry.
[20] M Yarus,et al. Diversity of oligonucleotide functions. , 1995, Annual review of biochemistry.
[21] D. Patel,et al. Structure, recognition and discrimination in RNA aptamer complexes with cofactors, amino acids, drugs and aminoglycoside antibiotics. , 2000, Journal of biotechnology.
[22] B. Suess,et al. Engineered riboswitches: Overview, problems and trends , 2008, RNA biology.
[23] K. Hideg,et al. Monitoring RNA base structure and dynamics using site-directed spin labeling. , 2003, Biochemistry.
[24] H. Zimmermann,et al. DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data , 2006 .
[25] A. Pardi,et al. NMR chemical exchange as a probe for ligand-binding kinetics in a theophylline-binding RNA aptamer. , 2009, Journal of the American Chemical Society.
[26] Michael Müller,et al. Thermodynamic characterization of an engineered tetracycline-binding riboswitch , 2006, Nucleic acids research.
[27] M. Famulok,et al. Oligonucleotide aptamers that recognize small molecules. , 1999, Current opinion in structural biology.
[28] A. Ferré-D’Amaré,et al. Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch. , 2008, Chemistry & biology.
[29] J. Szostak,et al. In vitro selection of functional nucleic acids. , 1999, Annual review of biochemistry.
[30] Samia Aci-Sèche,et al. Lesion-induced DNA weak structural changes detected by pulsed EPR spectroscopy combined with site-directed spin labelling , 2009, Nucleic acids research.
[31] S. Müller,et al. RNA double cleavage by a hairpin-derived twin ribozyme. , 2000, Nucleic acids research.
[32] G. Jeschke,et al. Dead-time free measurement of dipole-dipole interactions between electron spins. , 2000, Journal of magnetic resonance.
[33] H. Grubmüller,et al. Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1 , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[34] Wolfgang Hillen,et al. Gene regulation by tetracyclines. , 2004, Genetic engineering.
[35] G. Stock,et al. A PELDOR-based nanometer distance ruler for oligonucleotides. , 2004, Journal of the American Chemical Society.
[36] O. Delalande,et al. Double electron-electron resonance (DEER): a convenient method to probe DNA conformational changes. , 2008, Angewandte Chemie.
[37] Heinz-Jürgen Steinhoff,et al. A structure-based simulation approach for electron paramagnetic resonance spectra using molecular and stochastic dynamics simulations. , 2006, Biophysical journal.
[38] G. Jeschke,et al. Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance. , 2007, Physical chemistry chemical physics : PCCP.
[39] Barbara Fink,et al. Molecular analysis of a synthetic tetracycline-binding riboswitch. , 2005, RNA.
[40] Harald Schwalbe,et al. Interplay of ‘induced fit’ and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch , 2006, Nucleic acids research.
[41] H. Steinhoff,et al. Membrane Protein Structure and Dynamics Studied by Site-Directed Spin-Labeling ESR , 2007 .
[42] Beatrix Suess,et al. Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast , 2007, Nucleic acids research.
[43] C. Spahn,et al. Throwing a spanner in the works: antibiotics and the translation apparatus , 1996, Journal of Molecular Medicine.
[44] Karl-Dieter Entian,et al. A fast and efficient translational control system for conditional expression of yeast genes , 2009, Nucleic acids research.
[45] D. Patel,et al. Adaptive recognition by nucleic acid aptamers. , 2000, Science.
[46] B. Robinson,et al. Site-specific incorporation of nitroxide spin-labels into internal sites of the TAR RNA; structure-dependent dynamics of RNA by EPR spectroscopy. , 2001, Journal of the American Chemical Society.