Estimation of leaf area index using PROSAIL based LUT inversion, MLRA-GPR and empirical models: Case study of tropical deciduous forest plantation, North India

Abstract Forests play a vital role in biological cycles and environmental regulation. To understand the key processes of forest canopies (e.g., photosynthesis, respiration and transpiration), reliable and accurate information on spatial variability of Leaf Area Index (LAI), and its seasonal dynamics is essential. In the present study, we assessed the performance of biophysical parameter (LAI) retrieval methods viz. Look-Up Table (LUT)-inversion, MLRA-GPR (Machine Learning Regression Algorithm- Gaussian Processes Regression) and empirical models, for estimating the LAI of tropical deciduous plantation using ARTMO (Automated Radiative Transfer Models Operator) tool and Sentinel-2 satellite images. The study was conducted in Central Tarai Forest Division, Haldwani, located in the Uttarakhand state, India. A total of 49 ESUs (Elementary Sampling Unit) of 30 m × 30 m size were established based on variability in composition and age of plantation stands. In-situ LAI was recorded using plant canopy imager during the leaf growing, peak and senescence seasons. The PROSAIL model was calibrated with site-specific biophysical and biochemical parameters before used to the predicted LAI. The plantation LAI was also predicted by an empirical approach using optimally chosen Sentinel-2 vegetation indices. In addition, Sentinel-2 and MODIS LAI products were evaluated with respect to LAI measurements. MLRA-GPR offered best results for predicting LAI of leaf growing (R2 = 0.9, RMSE = 0.14), peak (R2 = 0.87, RMSE = 0.21) and senescence (R2 = 0.86, RMSE = 0.31) seasons while LUT inverted model outperformed VI’s based parametric regression model. Vegetation indices (VIs) derived from 740 nm, 783 nm and 2190 nm band combinations of Sentinel-2 offered the best prediction of LAI.

[1]  W. Verhoef,et al.  PROSPECT+SAIL models: A review of use for vegetation characterization , 2009 .

[2]  O. Hagolle,et al.  LAI, fAPAR and fCover CYCLOPES global products derived from VEGETATION: Part 1: Principles of the algorithm , 2007 .

[3]  A. Huete,et al.  Overview of the radiometric and biophysical performance of the MODIS vegetation indices , 2002 .

[4]  Ranga B. Myneni,et al.  Analysis of leaf area index and fraction of PAR absorbed by vegetation products from the terra MODIS sensor: 2000-2005 , 2006, IEEE Transactions on Geoscience and Remote Sensing.

[5]  S. Running,et al.  MODIS Leaf Area Index (LAI) And Fraction Of Photosynthetically Active Radiation Absorbed By Vegetation (FPAR) Product , 1999 .

[6]  R. Houborg,et al.  Combining vegetation index and model inversion methods for the extraction of key vegetation biophysical parameters using Terra and Aqua MODIS reflectance data , 2007 .

[7]  Wenjian Ni,et al.  Effects of Tree Trunks on Estimation of Clumping Index and LAI from HemiView and Terrestrial LiDAR , 2018 .

[8]  Richard L. Thompson,et al.  A snapshot of canopy reflectance models and a universal model for the radiation regime , 2000 .

[9]  F. Baret,et al.  Potentials and limits of vegetation indices for LAI and APAR assessment , 1991 .

[10]  D. J. Watson,et al.  Comparative Physiological Studies on the Growth of Field Crops: II. The Effect of Varying Nutrient Supply on Net Assimilation Rate and Leaf Area , 1947 .

[11]  Ruiliang Pu,et al.  Estimation of forest leaf area index using vegetation indices derived from Hyperion hyperspectral data , 2003, IEEE Trans. Geosci. Remote. Sens..

[12]  J. Goudriaan,et al.  SEPARATING THE DIFFUSE AND DIRECT COMPONENT OF GLOBAL RADIATION AND ITS IMPLICATIONS FOR MODELING CANOPY PHOTOSYNTHESIS PART I. COMPONENTS OF INCOMING RADIATION , 1986 .

[13]  M. Monsi,et al.  On the factor light in plant communities and its importance for matter production. 1953. , 2004, Annals of botany.

[14]  Jan G. P. W. Clevers,et al.  Optical remote sensing and the retrieval of terrestrial vegetation bio-geophysical properties - A review , 2015 .

[15]  S. Jacquemoud Inversion of the PROSPECT + SAIL Canopy Reflectance Model from AVIRIS Equivalent Spectra: Theoretical Study , 1993 .

[16]  A. Skidmore,et al.  Mapping spatio-temporal variation of grassland quantity and quality using MERIS data and the PROSAIL model , 2012 .

[17]  Vinay Kumar Sehgal,et al.  Inversion of radiative transfer model for retrieval of wheat biophysical parameters from broadband reflectance measurements , 2016 .

[18]  Hitendra Padalia,et al.  Estimating canopy LAI and chlorophyll of tropical forest plantation (North India) using Sentinel-2 data , 2020 .

[19]  J. L. Anderson,et al.  The Moment Method in Relativistic Radiative Transfer , 1972 .

[20]  Roberta E. Martin,et al.  PROSPECT-4 and 5: Advances in the leaf optical properties model separating photosynthetic pigments , 2008 .

[21]  Xuejian Li,et al.  Assimilating leaf area index of three typical types of subtropical forest in China from MODIS time series data based on the integrated ensemble Kalman filter and PROSAIL model , 2017 .

[22]  Hitendra Padalia,et al.  Evaluation of the Use of Hyperspectral Vegetation Indices for Estimating Mangrove Leaf Area Index in Middle Andaman Island, India , 2018, Remote Sensing Letters.

[23]  Clement Atzberger,et al.  Estimation of vegetation LAI from hyperspectral reflectance data: Effects of soil type and plant architecture , 2008, Int. J. Appl. Earth Obs. Geoinformation.

[24]  José F. Moreno,et al.  Toward a Semiautomatic Machine Learning Retrieval of Biophysical Parameters , 2014, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[25]  Clement Atzberger,et al.  Comparative analysis of different retrieval methods for mapping grassland leaf area index using airborne imaging spectroscopy , 2015, Int. J. Appl. Earth Obs. Geoinformation.

[26]  Gustau Camps-Valls,et al.  Quantifying Vegetation Biophysical Variables from Imaging Spectroscopy Data: A Review on Retrieval Methods , 2018, Surveys in Geophysics.

[27]  Andres Kuusk,et al.  Comparison of measured boreal forest characteristics with estimates from TM data and limited ancillary information using reflectance model inversion , 2002 .

[28]  S. Ustin,et al.  Estimating leaf biochemistry using the PROSPECT leaf optical properties model , 1996 .

[29]  P. Ciais,et al.  Widespread decline of Congo rainforest greenness in the past decade , 2014, Nature.

[30]  C.J.T. Spitters,et al.  Separating the diffuse and direct component of global radiation and its implications for modeling canopy photosynthesis Part II. Calculation of canopy photosynthesis , 1986 .

[31]  Jan G. P. W. Clevers,et al.  Experimental Sentinel-2 LAI estimation using parametric, non-parametric and physical retrieval methods - A comparison , 2015 .

[32]  U. Shukla,et al.  Geomorphology and sedimentology of Piedmont zone, Ganga Plain, India , 2003 .

[33]  K. Soudani,et al.  Estimation of forest leaf area index from SPOT imagery using NDVI distribution over forest stands , 2006 .

[34]  Carl E. Rasmussen,et al.  Gaussian processes for machine learning , 2005, Adaptive computation and machine learning.

[35]  L. D. Miller,et al.  Remote mapping of standing crop biomass for estimation of the productivity of the shortgrass prairie, Pawnee National Grasslands, Colorado , 1972 .

[36]  Michael E. Schaepman,et al.  A review on reflective remote sensing and data assimilation techniques for enhanced agroecosystem modeling , 2007, Int. J. Appl. Earth Obs. Geoinformation.

[37]  Clement Atzberger,et al.  First Experience with Sentinel-2 Data for Crop and Tree Species Classifications in Central Europe , 2016, Remote. Sens..

[38]  K. Zhao,et al.  Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests. , 2016 .

[39]  A. Skidmore,et al.  Inversion of a radiative transfer model for estimating vegetation LAI and chlorophyll in a heterogeneous grassland , 2008 .

[40]  Xiaoliang Lu,et al.  Comparison of Phenology Estimated from Reflectance-Based Indices and Solar-Induced Chlorophyll Fluorescence (SIF) Observations in a Temperate Forest Using GPP-Based Phenology as the Standard , 2018, Remote. Sens..

[41]  M. Monsi Uber den Lichtfaktor in den Pflanzengesellschaften und seine Bedeutung fur die Stoffproduktion , 1953 .

[42]  Matthias W. Seeger,et al.  Gaussian Processes For Machine Learning , 2004, Int. J. Neural Syst..

[43]  Luis Alonso,et al.  Evaluation of Sentinel-2 Red-Edge Bands for Empirical Estimation of Green LAI and Chlorophyll Content , 2011, Sensors.

[44]  Simon D. Jones,et al.  Understanding the variability in ground-based methods for retrieving canopy openness, gap fraction, and leaf area index in diverse forest systems , 2015 .

[45]  R. B. Jackson,et al.  Quantifying surface albedo and other direct biogeophysical climate forcings of forestry activities , 2015, Global change biology.

[46]  Jianhua Wang,et al.  Spatial Up-Scaling Correction for Leaf Area Index Based on the Fractal Theory , 2016, Remote. Sens..

[47]  C. Tucker Red and photographic infrared linear combinations for monitoring vegetation , 1979 .

[48]  Jan Pisek,et al.  Estimation of foliage clumping from the LAI-2000 Plant Canopy Analyzer: effect of view caps , 2014, Trees.

[49]  Michael A. Wulder,et al.  Opening the archive: How free data has enabled the science and monitoring promise of Landsat , 2012 .

[50]  J. Ross The radiation regime and architecture of plant stands , 1981, Tasks for vegetation sciences 3.

[51]  José F. Moreno,et al.  Multiple Cost Functions and Regularization Options for Improved Retrieval of Leaf Chlorophyll Content and LAI through Inversion of the PROSAIL Model , 2013, Remote. Sens..

[52]  Yadvinder Malhi,et al.  Convergence in relationships between leaf traits, spectra and age across diverse canopy environments and two contrasting tropical forests. , 2017, The New phytologist.

[53]  José F. Moreno,et al.  rown and green LAI mapping through spectral indices , 2014 .

[54]  K. N. Tiwari,et al.  Evaluation of Sentinel 2 Red Edge Channel for Enhancing Land Use Classification , 2020 .

[55]  R. Myneni,et al.  Investigation of a model inversion technique to estimate canopy biophysical variables from spectral and directional reflectance data , 2000 .

[56]  S. Singh,et al.  Assessment of allometric models for leaf area index estimation of Tectona grandis , 2017 .

[57]  S. Freden,et al.  Third Earth Resources Technology Satellite-1 Symposium- Volume I: Technical Presentations. NASA SP-351 , 1974 .

[58]  N. Goel,et al.  Influences of canopy architecture on relationships between various vegetation indices and LAI and Fpar: A computer simulation , 1994 .

[59]  Holly Croft,et al.  The applicability of empirical vegetation indices for determining leaf chlorophyll content over different leaf and canopy structures , 2014 .

[60]  L. Dini,et al.  ASSESSMENT OF LAI RETRIEVAL ACCURACY BY INVERTING A RT MODEL AND A SIMPLE EMPIRICAL MODEL WITH MULTIANGULAR AND HYPERSPECTRAL CHRIS / PROBA DATA FROM SPARC , 2005 .

[61]  Ferran Gascon,et al.  Sen2Cor for Sentinel-2 , 2017, Remote Sensing.

[62]  A. Huete A soil-adjusted vegetation index (SAVI) , 1988 .

[63]  R. Houborg,et al.  Remote sensing of LAI, chlorophyll and leaf nitrogen pools of crop and grasslands in five European landscapes , 2012 .

[64]  F. Baret,et al.  PROSPECT: A model of leaf optical properties spectra , 1990 .

[65]  J. A. Schell,et al.  Monitoring vegetation systems in the great plains with ERTS , 1973 .

[66]  P. Reich,et al.  New handbook for standardised measurement of plant functional traits worldwide , 2013 .

[67]  F. Baret,et al.  GAI estimates of row crops from downward looking digital photos taken perpendicular to rows at 57.5° zenith angle: Theoretical considerations based on 3D architecture models and application to wheat crops , 2010 .

[68]  C. Schaaf,et al.  Evaluating the potential of MODIS satellite data to track temporal dynamics of autumn phenology in a temperate mixed forest , 2015 .

[69]  Jan G. P. W. Clevers,et al.  Using Sentinel-2 Data for Retrieving LAI and Leaf and Canopy Chlorophyll Content of a Potato Crop , 2017, Remote. Sens..