Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space

Diffusion MRI requires sufficient coverage of the diffusion wavevector space, also known as the q-space, to adequately capture the pattern of water diffusion in various directions and scales. As a result, the acquisition time can be prohibitive for individuals who are unable to stay still in the scanner for an extensive period of time, such as infants. To address this problem, in this paper we harness non-local self-similar information in the x-q space of diffusion MRI data for q-space upsampling. Specifically, we first perform neighborhood matching to establish the relationships of signals in x-q space. The signal relationships are then used to regularize an ill-posed inverse problem related to the estimation of high angular resolution diffusion MRI data from its low-resolution counterpart. Our framework allows information from curved white matter structures to be used for effective regularization of the otherwise ill-posed problem. Extensive evaluations using synthetic and infant diffusion MRI data demonstrate the effectiveness of our method. Compared with the widely adopted interpolation methods using spherical radial basis functions and spherical harmonics, our method is able to produce high angular resolution diffusion MRI data with greater quality, both qualitatively and quantitatively.

[1]  Jean-Michel Morel,et al.  A Review of Image Denoising Algorithms, with a New One , 2005, Multiscale Model. Simul..

[2]  Dinggang Shen,et al.  Development Trends of White Matter Connectivity in the First Years of Life , 2011, PloS one.

[3]  Jean-Philippe Thiran,et al.  Phantomas: a flexible software library to simulate diffusion MR phantoms , 2014 .

[4]  Yong He,et al.  Development of human brain structural networks through infancy and childhood. , 2015, Cerebral cortex.

[5]  Mathews Jacob,et al.  Acceleration of high angular and spatial resolution diffusion imaging using compressed sensing with multichannel spiral data , 2015, Magnetic resonance in medicine.

[6]  Massimo Fornasier,et al.  Compressive Sensing , 2015, Handbook of Mathematical Methods in Imaging.

[7]  Bin Dong Sparse Representation on Graphs by Tight Wavelet Frames and Applications , 2014, 1411.2643.

[8]  Ke Li,et al.  Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing , 2016, Scientific Reports.

[9]  Dinggang Shen,et al.  Tight Graph Framelets for Sparse Diffusion MRI q-Space Representation , 2016, MICCAI.

[10]  Dinggang Shen,et al.  q-Space Upsampling Using x-q Space Regularization , 2017, MICCAI.

[11]  E. Bullmore,et al.  Formal characterization and extension of the linearized diffusion tensor model , 2005, Human brain mapping.

[12]  Pew-Thian Yap,et al.  Robust Fusion of Diffusion MRI Data for Template Construction , 2017, Scientific Reports.

[13]  Dinggang Shen,et al.  Multi-Tissue Decomposition of Diffusion MRI Signals via $\ell _{0}$ Sparse-Group Estimation , 2016, IEEE Transactions on Image Processing.

[14]  I. Koerte,et al.  Diffusion Tensor Imaging , 2014 .

[15]  Dinggang Shen,et al.  The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development , 2019, NeuroImage.

[16]  R. Deriche,et al.  Regularized, fast, and robust analytical Q‐ball imaging , 2007, Magnetic resonance in medicine.

[17]  Dinggang Shen,et al.  Joint 6D k-q Space Compressed Sensing for Accelerated High Angular Resolution Diffusion MRI , 2015, IPMI.

[18]  Dinggang Shen,et al.  Graph-Constrained Sparse Construction of Longitudinal Diffusion-Weighted Infant Atlases , 2017, MICCAI.

[19]  Dawn Fallik The Human Connectome Project Turns to Mapping Brain Development, from Birth through Early Childhood , 2016 .

[20]  D. Tuch Q‐ball imaging , 2004, Magnetic resonance in medicine.

[21]  Maxime Descoteaux,et al.  Collaborative patch-based super-resolution for diffusion-weighted images , 2013, NeuroImage.

[22]  Daan Christiaens,et al.  Quiet echo planar imaging for functional and diffusion MRI , 2017, Magnetic resonance in medicine.

[23]  Leo Grady,et al.  FOCUSR: Feature Oriented Correspondence Using Spectral Regularization--A Method for Precise Surface Matching , 2013, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[24]  Steen Moeller,et al.  The Human Connectome Project: A data acquisition perspective , 2012, NeuroImage.

[25]  Dinggang Shen,et al.  Block-Based Statistics for Robust Non-parametric Morphometry , 2015, Patch-MI@MICCAI.

[26]  F G Shellock,et al.  Auditory noise associated with MR procedures: a review. , 2000, Journal of magnetic resonance imaging : JMRI.

[27]  Jerry L. Prince,et al.  Estimation of fiber orientations using neighborhood information , 2016, Medical Image Anal..

[28]  Dinggang Shen,et al.  Denoising magnetic resonance images using collaborative non-local means , 2016, Neurocomputing.

[29]  Dinggang Shen,et al.  XQ-NLM: Denoising Diffusion MRI Data via x-q Space Non-local Patch Matching , 2016, MICCAI.

[30]  G. Dehaene-Lambertz,et al.  The early development of brain white matter: A review of imaging studies in fetuses, newborns and infants , 2014, Neuroscience.

[31]  Yong Zhang,et al.  Multi-Tissue Decomposition of Diffusion MRI Signals via Sparse-Group Estimation. , 2016 .

[32]  Rachid Deriche,et al.  Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use? , 2015, Medical Image Anal..

[33]  Cheng Guan Koay,et al.  A signal transformational framework for breaking the noise floor and its applications in MRI. , 2009, Journal of magnetic resonance.

[34]  Yong He,et al.  Developmental Connectomics from Infancy through Early Childhood , 2017, Trends in Neurosciences.

[35]  R.G. Baraniuk,et al.  Compressive Sensing [Lecture Notes] , 2007, IEEE Signal Processing Magazine.

[36]  Dinggang Shen,et al.  Neighborhood Matching for Curved Domains with Application to Denoising in Diffusion MRI , 2017, MICCAI.

[37]  Anqi Qiu,et al.  Diffusion tensor imaging for understanding brain development in early life. , 2015, Annual review of psychology.

[38]  Michael Elad,et al.  Generalizing the Nonlocal-Means to Super-Resolution Reconstruction , 2009, IEEE Transactions on Image Processing.

[39]  Dinggang Shen,et al.  Spatio‐angular consistent construction of neonatal diffusion MRI atlases , 2017, Human brain mapping.