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Structural health monitoring (SHM) systems use the non-destructive testing principle for damage identification. As part of SHM, the propagation of ultrasonic guided waves (UGWs) is tracked and analyzed for the changes in the associated wave pattern. These changes help identify the location of a structural damage, if any. We advance existing research by accounting for uncertainty in the material and geometric properties of a structure. The physics model used in this study comprises of a monolithically coupled system of acoustic and elastic wave equations, known as the wave propagation in fluid-solid and their interface (WpFSI) problem. As the UGWs propagate in the solid, fluid, and their interface, the wave signal displacement measurements are contrasted against the benchmark pattern. For the numerical solution, we develop an efficient algorithm that successfully addresses the inherent complexity of solving the multiphysics problem under uncertainty. We present a procedure that uses Gaussian process regression and convolutional neural network for predicting the UGW propagation in a solid-fluid and their interface under uncertainty. First, a set of training images for different realizations of the uncertain parameters of the inclusion inside the structure is generated using a monolithically-coupled system of acoustic and elastic wave equations. Next, Gaussian processes trained with these images are used for predicting the propagated wave with convolutional neural networks for further enhancement to produce high-quality images of the wave patterns for new realizations of the uncertainty. The results indicate that the proposed approach provides an accurate prediction for the WpFSI problem in the presence of uncertainty.