Genomics: Transcript Profiling and Reverse Genetics Applications Functional Arabidopsis Versatile Gene-Specific Sequence Tags for

service Email alerting click here top right corner of the article or Receive free email alerts when new articles cite this article-sign up in the box at the

[1]  R. Wing,et al.  Construction and characterization of a bacterial artificial chromosome library ofArabidopsis thaliana , 1995, Plant Molecular Biology Reporter.

[2]  D. Inzé,et al.  Transcript profiling of early lateral root initiation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. Weissenbach,et al.  Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation. , 2004, Genome research.

[4]  Y. Hiei,et al.  Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.). , 2004, The Plant journal : for cell and molecular biology.

[5]  Yong Li,et al.  An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics , 2003, Plant Molecular Biology.

[6]  G. Hagen,et al.  Auxin-responsive gene expression: genes, promoters and regulatory factors , 2002, Plant Molecular Biology.

[7]  E. Liscum,et al.  Genetics of Aux/IAA and ARF action in plant growth and development , 2002, Plant Molecular Biology.

[8]  R. Hellens,et al.  pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation , 2000, Plant Molecular Biology.

[9]  C. Koncz,et al.  The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector , 1986, Molecular and General Genetics MGG.

[10]  Pierre Rouzé,et al.  Automatic design of gene-specific sequence tags for genome-wide functional studies , 2003, Bioinform..

[11]  D. Baulcombe,et al.  High throughput virus‐induced gene silencing implicates heat shock protein 90 in plant disease resistance , 2003, The EMBO journal.

[12]  Joseph M. Dale,et al.  Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome , 2003, Science.

[13]  M. Kuiper,et al.  European consortia building integrated resources for Arabidopsis functional genomics. , 2003, Current opinion in plant biology.

[14]  Douglas A. Hosack,et al.  Identifying biological themes within lists of genes with EASE , 2003, Genome Biology.

[15]  P. Waterhouse,et al.  Constructs and methods for high-throughput gene silencing in plants. , 2003, Methods.

[16]  M. Schmid,et al.  Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana , 2003, Science.

[17]  Jinfa F. Zhang,et al.  The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats. , 2003, The Plant journal : for cell and molecular biology.

[18]  Steen Knudsen,et al.  Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays , 2003, Nucleic Acids Res..

[19]  K. Toriyama,et al.  A pentatricopeptide repeat‐containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male‐sterile rice , 2003, FEBS letters.

[20]  Christopher D Town,et al.  Annotation of the Arabidopsis Genome1 , 2003, Plant Physiology.

[21]  L. Cattolico,et al.  Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide‐repeat protein family , 2003 .

[22]  S. Kawasaki,et al.  Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish. , 2003, The Plant journal : for cell and molecular biology.

[23]  Christopher D Town,et al.  Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray. , 2003, Genome research.

[24]  A I Saeed,et al.  TM4: a free, open-source system for microarray data management and analysis. , 2003, BioTechniques.

[25]  A. Depicker,et al.  RNA Target Sequences Promote Spreading of RNA Silencing1 , 2003, Plant Physiology.

[26]  Jungwon Yoon,et al.  The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community , 2003, Nucleic Acids Res..

[27]  Peter M. Waterhouse,et al.  Exploring plant genomes by RNA-induced gene silencing , 2003, Nature Reviews Genetics.

[28]  Pierre Rouzé,et al.  CATMA: a complete Arabidopsis GST database , 2003, Nucleic Acids Res..

[29]  S. Goff,et al.  A High-Throughput Arabidopsis Reverse Genetics System Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004630. , 2002, The Plant Cell Online.

[30]  Andrew J. Holloway,et al.  Options available—from start to finish—for obtaining data from DNA microarrays II , 2002, Nature Genetics.

[31]  Ying Xu,et al.  PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis , 2002, Bioinform..

[32]  Klaas Vandepoele,et al.  The hidden duplication past of Arabidopsis thaliana , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[33]  Hao Chen,et al.  Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region , 2002, BMC Bioinformatics.

[34]  S. Bentolila,et al.  A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[35]  John Aach,et al.  Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[36]  K. Schumacher,et al.  A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase. , 2002, Trends in plant science.

[37]  K. Akiyama,et al.  Functional Annotation of a Full-Length Arabidopsis cDNA Collection , 2002, Science.

[38]  Jean-Marie Rouillard,et al.  OligoArray: genome-scale oligonucleotide design for microarrays , 2002, Bioinform..

[39]  S. Dudoit,et al.  Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. , 2002, Nucleic acids research.

[40]  Gregory J. Hannon,et al.  Insight Review Articles , 2022 .

[41]  Sandrine Balzergue,et al.  FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants , 2002, Nucleic Acids Res..

[42]  B. Haas,et al.  Full-length messenger RNA sequences greatly improve genome annotation , 2002, Genome Biology.

[43]  D. Leister,et al.  GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags. , 2001, Nucleic acids research.

[44]  Gary D. Stormo,et al.  Selection of optimal DNA oligos for gene expression arrays , 2001, Bioinform..

[45]  P. Waterhouse,et al.  Construct design for efficient, effective and high-throughput gene silencing in plants. , 2001, The Plant journal : for cell and molecular biology.

[46]  J. Görlach,et al.  Growth Stage–Based Phenotypic Analysis of Arabidopsis , 2001, The Plant Cell Online.

[47]  Jonathan Knight,et al.  When the chips are down , 2001, Nature.

[48]  Yudong D. He,et al.  Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer , 2001, Nature Biotechnology.

[49]  Pierre R. Bushel,et al.  Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models , 2001, J. Comput. Biol..

[50]  Xun Wang,et al.  Large-scale profiling of the Arabidopsis transcriptome. , 2000, Plant physiology.

[51]  R. Amasino,et al.  The Arabidopsis knockout facility at the University of Wisconsin-Madison. , 2000, Plant physiology.

[52]  J. Ohlrogge,et al.  Microarray analysis of developing Arabidopsis seeds. , 2000, Plant physiology.

[53]  J. Hartley,et al.  DNA cloning using in vitro site-specific recombination. , 2000, Genome research.

[54]  Neil A. Smith,et al.  Gene expression: Total silencing by intron-spliced hairpin RNAs , 2000, Nature.

[55]  Thomas Schiex,et al.  EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence , 2000, JOBIM.

[56]  E. Wisman,et al.  Monitoring genome-wide expression in plants. , 2000, Current opinion in biotechnology.

[57]  M. Vidal,et al.  Protein interaction mapping in C. elegans using proteins involved in vulval development. , 2000, Science.

[58]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[59]  J. Chory,et al.  The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development. , 1999, Genes & development.

[60]  V. Sundaresan,et al.  Analysis of Flanking Sequences from Dissociation Insertion Lines: A Database for Reverse Genetics in Arabidopsis , 1999, Plant Cell.

[61]  W. Stiekema,et al.  A Two-Component Enhancer-Inhibitor Transposon Mutagenesis System for Functional Analysis of the Arabidopsis Genome , 1999, Plant Cell.

[62]  J. Glasner,et al.  Genome-wide expression profiling in Escherichia coli K-12. , 1999, Nucleic acids research.

[63]  Sebastian Kloska,et al.  A complete BAC-based physical map of the Arabidopsis thaliana genome , 1999, Nature Genetics.

[64]  S. Cutler,et al.  The irregular xylem3 locus of Arabidopsis encodes a cellulose synthase required for secondary cell wall synthesis. , 1999, The Plant cell.

[65]  S. Clough,et al.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[66]  C. Somerville,et al.  Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. , 1997, The Plant cell.

[67]  K. Feldmann,et al.  T-DNA insertion mutagenesis in Arabidopsis: going back and forth. , 1997, Trends in Genetics.

[68]  Gapped BLAST and PSI-BLAST: A new , 1997 .

[69]  K. Kaiser,et al.  Analysis and Inactivation of vha55, the Gene Encoding the Vacuolar ATPase B-subunit in Drosophila melanogaster Reveals a Larval Lethal Phenotype* , 1996, The Journal of Biological Chemistry.

[70]  K. Kaiser,et al.  The Drosophila melanogaster gene vha14 encoding a 14-kDa F-subunit of the vacuolar ATPase. , 1996, Gene.

[71]  T. Ferea,et al.  The vacuolar ATPase of Neurospora crassa is indispensable: inactivation of the vma-1 gene by repeat-induced point mutation. , 1996, Genetics.

[72]  H. Nojima,et al.  High efficiency transformation of Escherichia coli with plasmids. , 1990, Gene.

[73]  D. Inzé,et al.  The functional organization of the nopaline A. tumefaciens plasmid pTiC58. , 1980, Plasmid.