The Crystal Structure of the Primary Ca2+ Sensor of the Na+/Ca2+ Exchanger Reveals a Novel Ca2+ Binding Motif*

The Na+/Ca2+ exchanger is a plasma membrane protein that regulates intracellular Ca2+ levels in cardiac myocytes. Transport activity is governed by Ca2+, and the primary Ca2+ sensor (CBD1) is located in a large cytoplasmic loop connecting two transmembrane helices. The binding of Ca2+ to the CBD1 sensory domain results in conformational changes that stimulate the exchanger to extrude Ca2+. Here, we present a crystal structure of CBD1 at 2.5Å resolution, which reveals a novel Ca2+ binding site consisting of four Ca2+ ions arranged in a tight planar cluster. This intricate coordination pattern for a Ca2+ binding cluster is indicative of a highly sensitive Ca2+ sensor and may represent a general platform for Ca2+ sensing.

[1]  G. W. Vuister,et al.  Ca2+ regulation in the Na+/Ca2+ exchanger involves two markedly different Ca2+ sensors. , 2006, Molecular cell.

[2]  J. Saven,et al.  Simulation of pH‐dependent edge strand rearrangement in human β‐2 microglobulin , 2006 .

[3]  D. Nicoll,et al.  Mutational Analysis of the α-1 Repeat of the Cardiac Na+-Ca2+ Exchanger* , 2005, Journal of Biological Chemistry.

[4]  T. Südhof,et al.  Structural basis for the evolutionary inactivation of Ca2+ binding to synaptotagmin 4 , 2004, Nature Structural &Molecular Biology.

[5]  S. John,et al.  Conformational changes of the Ca(2+) regulatory site of the Na(+)-Ca(2+) exchanger detected by FRET. , 2004, Biophysical journal.

[6]  I. Levitan A Well-Stocked Pool , 2004, Science.

[7]  D Timmann,et al.  Disorders in Timing and Force of Finger Opening in Overarm Throws Made by Cerebellar Subjects , 2002, Annals of the New York Academy of Sciences.

[8]  T. Boggon,et al.  C-Cadherin Ectodomain Structure and Implications for Cell Adhesion Mechanisms , 2002, Science.

[9]  J. Richardson,et al.  Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[10]  Timothy B. Stockwell,et al.  The Sequence of the Human Genome , 2001, Science.

[11]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[12]  A. Poupon,et al.  The immunoglobulin fold family: sequence analysis and 3D structure comparisons. , 1999, Protein engineering.

[13]  D. Nicoll,et al.  A New Topological Model of the Cardiac Sarcolemmal Na+-Ca2+ Exchanger* , 1999, The Journal of Biological Chemistry.

[14]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[15]  T. Südhof,et al.  Ca2+ binding to synaptotagmin: how many Ca2+ ions bind to the tip of a C2‐domain? , 1998, The EMBO journal.

[16]  T. Südhof,et al.  C2-domains, Structure and Function of a Universal Ca2+-binding Domain* , 1998, The Journal of Biological Chemistry.

[17]  S. Benzer,et al.  Calx, a Na-Ca exchanger gene of Drosophila melanogaster. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[18]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[19]  C P Ponting,et al.  Evidence for PDZ domains in bacteria, yeast, and plants , 1997, Protein science : a publication of the Protein Society.

[20]  D. Reinhardt,et al.  Calcium Stabilizes Fibrillin-1 against Proteolytic Degradation* , 1997, The Journal of Biological Chemistry.

[21]  T. Südhof,et al.  Bipartite Ca2+-Binding Motif in C2 Domains of Synaptotagmin and Protein Kinase C , 1996, Science.

[22]  Roger L. Williams,et al.  Crystal structure of a mammalian phosphoinositide-specific phospholipase Cδ , 1996, Nature.

[23]  Martin D. Bootman,et al.  The elemental principles of calcium signaling , 1995, Cell.

[24]  J. Weiss,et al.  Regulation of the cardiac Na(+)-Ca2+ exchanger by Ca2+. Mutational analysis of the Ca(2+)-binding domain , 1995, The Journal of general physiology.

[25]  D. Nicoll,et al.  Identification of the high affinity Ca(2+)-binding domain of the cardiac Na(+)-Ca2+ exchanger. , 1994, The Journal of biological chemistry.

[26]  Donald M. Bers,et al.  Excitation-Contraction Coupling and Cardiac Contractile Force , 1991, Developments in Cardiovascular Medicine.

[27]  T Pawson,et al.  A noncatalytic domain conserved among cytoplasmic protein-tyrosine kinases modifies the kinase function and transforming activity of Fujinami sarcoma virus P130gag-fps , 1986, Molecular and cellular biology.

[28]  Charles E. Bugg,et al.  Three-dimensional structure of calmodulin , 1985, Nature.

[29]  R. Adelstein Calmodulin and the regulation of the actin—myosin interaction in smooth muscle and nonmuscle cells , 1982, Cell.

[30]  P. Afonine,et al.  research papers Acta Crystallographica Section D Biological , 2003 .

[31]  D. Bers Na/Ca Exchange and the Sarcolemmal Ca-Pump , 2001 .

[32]  Chris Sander,et al.  Touring protein fold space with Dali/FSSP , 1998, Nucleic Acids Res..

[33]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[34]  Randy J Read,et al.  Electronic Reprint Biological Crystallography Likelihood-enhanced Fast Translation Functions Biological Crystallography Likelihood-enhanced Fast Translation Functions , 2022 .