The potential of sedimentary ancient DNA for reconstructing past sea ice evolution

[1]  A. Timmermann,et al.  Sea ice variability in the southern Norwegian Sea during glacial Dansgaard-Oeschger climate cycles , 2019, Science Advances.

[2]  S. Belt.  Source-specific biomarkers as proxies for Arctic and Antarctic sea ice , 2018, Organic Geochemistry.

[3]  Lijun He,et al.  A 43 kyr record of protist communities and their response to oxygen minimum zone variability in the Northeastern Arabian Sea , 2018, Earth and Planetary Science Letters.

[4]  N. Nørgaard-Pedersen,et al.  Linking the Modern Distribution of Biogenic Proxies in High Arctic Greenland Shelf Sediments to Sea Ice, Primary Production, and Arctic‐Atlantic Inflow , 2018 .

[5]  W. Orsi,et al.  A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform , 2017, bioRxiv.

[6]  L. Orlando,et al.  Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology , 2017 .

[7]  Lijun He,et al.  Climate oscillations reflected within the microbiome of Arabian Sea sediments , 2016, Scientific Reports.

[8]  M. Celussi,et al.  Water mass dynamics shape Ross Sea protist communities in mesopelagic and bathypelagic layers , 2016 .

[9]  C. Quince,et al.  Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities , 2016, Molecular ecology.

[10]  Ben Nichols,et al.  VSEARCH: a versatile open source tool for metagenomics , 2016, PeerJ.

[11]  T. L. Rasmussen,et al.  Sea ice and millennial-scale climate variability in the Nordic seas 90 kyr ago to present , 2016, Nature Communications.

[12]  S. Schmidt,et al.  Historical records from dated sediment cores reveal the multidecadal dynamic of the toxic dinoflagellate Alexandrium minutum in the Bay of Brest (France). , 2016, FEMS microbiology ecology.

[13]  Idar Olsen.  Investigations of abrupt climate change offshore east Greenland continental margin during marine isotope stages 3 and 5 , 2016 .

[14]  S. Belt,et al.  Semi-quantitative estimates of paleo Arctic sea ice concentration based on source-specific highly branched isoprenoid alkenes: A further development of the PIP25 index , 2016 .

[15]  B. Beszteri,et al.  rRNA and rDNA based assessment of sea ice protist biodiversity from the central Arctic Ocean , 2016 .

[16]  J. Matthiessen,et al.  Early Pliocene onset of modern Nordic Seas circulation related to ocean gateway changes , 2015, Nature Communications.

[17]  J. Berge,et al.  In the dark: A review of ecosystem processes during the Arctic polar night , 2015 .

[18]  Karl Deisseroth,et al.  Corrigendum: Ventral hippocampal afferents to the nucleus accumbens regulate susceptibility to depression , 2015, Nature Communications.

[19]  Eske Willerslev,et al.  Environmental DNA - An emerging tool in conservation for monitoring past and present biodiversity , 2015 .

[20]  B. Wehrli,et al.  Alkenone distribution in Lake Van sediment over the last 270 ka: influence of temperature and haptophyte species composition , 2014 .

[21]  M. Zajączkowski,et al.  Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium , 2014, Geobiology.

[22]  C. Mundy,et al.  Source identification of the Arctic sea ice proxy IP25 , 2014, Nature Communications.

[23]  I. Jonassen,et al.  Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers , 2014, PloS one.

[24]  S. Audic,et al.  Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles , 2013, The ISME Journal.

[25]  A. Vernal,et al.  Sea ice in the paleoclimate system: the challenge of reconstructing sea ice from proxies – an introduction , 2013 .

[26]  J. Müller,et al.  The Arctic sea ice biomarker IP25: a review of current understanding, recommendations for future research and applications in palaeo sea ice reconstructions , 2013 .

[27]  Camille Li,et al.  Dansgaard-Oeschger cycles: Interactions between ocean and sea ice intrinsic to the Nordic seas , 2013 .

[28]  J. Pawlowski,et al.  Ancient DNA complements microfossil record in deep-sea subsurface sediments , 2013, Biology Letters.

[29]  Christopher Quince,et al.  Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene , 2013, Proceedings of the National Academy of Sciences.

[30]  J. Gong,et al.  Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates. , 2013, Protist.

[31]  M. Gosselin,et al.  Protists in Arctic drift and land‐fast sea ice , 2013, Journal of phycology.

[32]  Stéphane Audic,et al.  The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy , 2012, Nucleic Acids Res..

[33]  R. Stein,et al.  Modern seasonal variability and deglacial/Holocene change of central Arctic Ocean sea-ice cover: New insights from biomarker proxy records , 2012 .

[34]  C. Lovejoy,et al.  Distribution and Diversity of a Protist Predator Cryothecomonas (Cercozoa) in Arctic Marine Waters , 2012, The Journal of eukaryotic microbiology.

[35]  Holly M. Bik,et al.  Sequencing our way towards understanding global eukaryotic biodiversity. , 2012, Trends in ecology & evolution.

[36]  J. S. Sinninghe Damsté,et al.  Preservation potential of ancient plankton DNA in Pleistocene marine sediments , 2011, Geobiology.

[37]  P. Wassmann,et al.  Future Arctic Ocean Seasonal Ice Zones and Implications for Pelagic-Benthic Coupling , 2011 .

[38]  Axel Wagner,et al.  Towards quantitative sea ice reconstructions in the northern North Atlantic: A combined biomarker and numerical modelling approach , 2011 .

[39]  J. Damsté,et al.  Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean , 2011 .

[40]  D. Moreira,et al.  Diversity and Vertical Distribution of Microbial Eukaryotes in the Snow, Sea Ice and Seawater Near the North Pole at the End of the Polar Night , 2011, Front. Microbio..

[41]  J. Bunge,et al.  Protistan microbial observatory in the Cariaco Basin , Caribbean . II . Habitat specialization , 2011 .

[42]  M. Barucca,et al.  Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep‐sea sediments , 2011, Molecular ecology.

[43]  B. Leander,et al.  An SSU rDNA barcoding approach to the diversity of marine interstitial cercozoans, including descriptions of four novel genera and nine novel species. , 2010, International journal of systematic and evolutionary microbiology.

[44]  H. Bolhuis,et al.  Variability of protistan and bacterial communities in two Arctic fjords (Spitsbergen) , 2010, Polar Biology.

[45]  F. Not,et al.  New Insights into the Diversity of Marine Picoeukaryotes , 2009, PloS one.

[46]  C. Lovejoy,et al.  Mesopelagic protists: diversity and succession in a coastal Arctic ecosystem , 2009 .

[47]  J. S. Sinninghe Damsté,et al.  Late‐Holocene succession of dinoflagellates in an Antarctic fjord using a multi‐proxy approach: paleoenvironmental genomics, lipid biomarkers and palynomorphs , 2009, Geobiology.

[48]  A. Dell'Anno,et al.  Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences , 2008, Molecular ecology.

[49]  S. Piraino,et al.  First record of sympagic hydroids (Hydrozoa, Cnidaria) in Arctic coastal fast ice , 2007, Polar Biology.

[50]  T. Stoeck,et al.  Cellular Identification of a Novel Uncultured Marine Stramenopile (MAST-12 Clade) Small-Subunit rRNA Gene Sequence from a Norwegian Estuary by Use of Fluorescence In Situ Hybridization-Scanning Electron Microscopy , 2007, Applied and Environmental Microbiology.

[51]  C. Pedrós-Alió,et al.  Marine microbial diversity: can it be determined? , 2006, Trends in microbiology.

[52]  C. Pedrós-Alió,et al.  Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas , 2006, Applied and Environmental Microbiology.

[53]  J. Damsté,et al.  Ancient DNA derived from alkenone‐biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea , 2006 .

[54]  R. Knight,et al.  UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.

[55]  Q. Wheeler,et al.  The perils of DNA barcoding and the need for integrative taxonomy. , 2005, Systematic biology.

[56]  M. Hofreiter,et al.  Assessing ancient DNA studies. , 2005, Trends in ecology & evolution.

[57]  R. Hopcroft,et al.  Gelatinous zooplankton of the Arctic Ocean: in situ observations under the ice , 2005, Polar Biology.

[58]  C. Pedrós-Alió,et al.  Phylogenetic and Ecological Analysis of Novel Marine Stramenopiles , 2004, Applied and Environmental Microbiology.

[59]  H. Poinar,et al.  Ancient DNA: Do It Right or Not at All , 2000, Science.

[60]  G. Procaccini,et al.  POLARELLA GLACIALIS, GEN. NOV., SP. NOV. (DINOPHYCEAE): SUESSIACEAE ARE STILL ALIVE! , 1999 .

[61]  D. Patterson,et al.  Diversity and Geographic Distribution of Free-Living Heterotrophic Flagellates - Analysis by PRIMER. , 1998, Protist.

[62]  G. Lange,et al.  Preservation of organic-walled dinoflagellate cysts in different oxygen regimes: a 10,000 year natural experiment , 1997 .

[63]  A. McMinn.  Why are there no post-Paleogene dinoflagellate cysts in the Southern Ocean? , 1995 .

[64]  S. Pääbo.  Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[65]  P. Froelich,et al.  Dissolution and Preservation of Antarctic Diatoms and the Effect on Sediment Thanatocoenoses , 1989, Quaternary Research.

[66]  R. Whittaker.  Vegetation of the Siskiyou Mountains, Oregon and California , 1960 .

[67]  R. Macdonald,et al.  Surface sediment dinoflagellate cysts from the Hudson Bay system and their relation to freshwater and nutrient cycling , 2014 .

[68]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[69]  Huirong Li,et al.  Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis , 2008, Polar Biology.

[70]  M. Poulin,et al.  A novel chemical fossil of palaeo sea ice: IP25 , 2007 .

[71]  J. Overmann,et al.  217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment. , 2007, Environmental microbiology.

[72]  S. Epstein.  Microbial Food Webs in Marine Sediments. I. Trophic Interactions and Grazing Rates in Two Tidal Flat Communities , 1997, Microbial Ecology.