Canonical T cell receptor docking on peptide–MHC is essential for T cell signaling

Making sense of TCR–pMHC topology Most T cells use a T cell receptor (TCR) that recognizes major histocompatibility complex molecules bound to peptides (pMHCs) derived from both self- and foreign antigens. Although there is great variability in the interface because of the diversity of both partners, this interaction displays a canonical docking topology for reasons that remain contested. Zareie et al. tested an assortment of both canonical and reversed-polarity TCRs that were all specific for the same cognate pMHC-I bearing a peptide derived from influenza A virus (IAV) (see the Perspective by Horkova and Stepanek). The authors determined that docking topology was the primary driver of in vivo T cell activation and recruitment when mice were infected with IAV. The canonical topology was required for the formation of a functional signaling complex, suggesting that T cell signaling constraints dictate how TCR and pMHC meet. Science, abe9124, this issue p. eabe9124; see also abj2937, p. 1038 The highly conserved nature of T cell antigen receptor recognition is required for the colocalization of key signaling molecules. INTRODUCTION T cell receptor (TCR) recognition of peptide–major histocompatibility complexes (pMHCs) is one of the most diverse receptor–ligand interactions in biology. Nevertheless, these interactions exhibit a highly conserved, or canonical, TCR–pMHC docking polarity in both mice and humans. Whether this canonical docking polarity is driven by evolutionarily conserved, germline-encoded complementarity between the TCR and MHC or by signaling constraints imposed by coreceptors has been a question of enduring debate. Here, we demonstrate that although reversed-polarity TCR–pMHC recognition is prevalent within a naïve, viral epitope–specific T cell repertoire and may exhibit relatively high pMHCI affinity, such TCRs are unable to support TCR signaling in the presence of CD8 coreceptor because of mislocalization of Lck. These data support a paradigm in which the highly conserved TCR–pMHCI docking polarity is driven by structural constraints on TCR signaling. RATIONALE Evidence suggests that the canonical TCR–pMHC docking polarity is driven by evolutionary hardwiring of complementary germline-encoded motifs at the TCR and MHC interface. An alternate model suggests that TCR recognition of pMHC is driven during thymic selection by the need for the CD4 or CD8 coreceptors to bind MHC and deliver coreceptor-associated Lck to the CD3 signaling complex. We previously identified reversed-polarity TRBV17+ TCRs from the preimmune influenza A virus (IAV)–specific repertoire that bound pMHCI (H-2DbNP366) with a moderate affinity but were unable to support robust T cell recruitment. Here, using a range of canonical and reversed TCRs specific for the same cognate pMHCI, we tested the hypothesis that the TCR–pMHCI docking polarity precedes binding strength as a key determinant of T cell activation. We hypothesized that the underlying driver of the canonical docking polarity is the colocalization of signaling molecules central to the TCR signal transduction pathway. RESULTS In this study, we demonstrate that reversed TCRs are prevalent in a naïve virus–specific repertoire but are poorly represented in the immune response after virus challenge. We identified antigen-specific TCRαβ clonotypes that were either poorly recruited or clonally expanded and found an overriding association between immune prevalence and canonical TCR–pMHCI docking. This was irrespective of pMHCI affinity, catch or slip bond formation, or TCR clustering, demonstrating that a canonical docking polarity is required for T cell activation. This finding was verified after viral challenge of adoptively transferred retrogenic T cells expressing reversed or canonical docking TCRs of varying affinities. The inability of T cells expressing reversed-docking TCRs to be recruited into the antiviral immune response demonstrates that TCR–pMHCI docking topology supersedes TCR–pMHCI affinity as the primary determinant for effective in vivo immune recruitment. Using fluorescence lifetime imaging microscopy (FLIM)–Förster resonance energy transfer (FRET) analyses, we show that canonical TCR–pMHCI docking is essential for the colocalization of CD8–Lck with CD3ζ, which is impaired when the TCR engages pMHCI with reversed polarity. The requirement for canonical TCR–pMHCI docking can be circumvented by the removal of the CD8 coreceptor or by dissociation of Lck from CD8, suggesting that sequestration of Lck by the CD8 coreceptor has a dual role: potentiating signaling arising from canonical TCR–pMHCI interactions and impeding reversed-polarity TCR–pMHCI signaling. CONCLUSION The inability of reversed-polarity TCRs to participate in the immune response occurs independently of TCR–pMHCI binding affinity and instead is a direct consequence of reversed TCR–pMHCI engagement. Most TCR–pMHC complexes that have been solved to date, upon which the canonical TCR–pMHCI docking paradigm has been established, were derived from expanded immune repertoires. Thus, we conclude that the highly conserved docking polarity is driven predominantly by the structural constraints imposed on TCR signaling and recruitment into an immune response. In addition to the well-recognized augmentation of signaling resulting from canonical TCR–pMHCI engagement, our findings suggest a role for coreceptor–Lck association in preventing signaling by noncanonical TCR–pMHC recognition. Such negative regulation would serve to limit the extent of functional TCR cross-reactivity and constrain the number of signaling-competent TCR-binding modalities. The canonical polarity of TCR–pMHC docking is essential for colocalization of CD3 and coreceptor-associated Lck and for productive TCR signaling. Schematic shows how canonical TCR–pMHC recognition colocalizes Lck and CD3, driving TCR-mediated signaling. By contrast, a reversed TCR–pMHC recognition polarity mislocalizes Lck and CD3, impeding signaling. T cell receptor (TCR) recognition of peptide–major histocompatibility complexes (pMHCs) is characterized by a highly conserved docking polarity. Whether this polarity is driven by recognition or signaling constraints remains unclear. Using “reversed-docking” TCRβ-variable (TRBV) 17+ TCRs from the naïve mouse CD8+ T cell repertoire that recognizes the H-2Db–NP366 epitope, we demonstrate that their inability to support T cell activation and in vivo recruitment is a direct consequence of reversed docking polarity and not TCR–pMHCI binding or clustering characteristics. Canonical TCR–pMHCI docking optimally localizes CD8/Lck to the CD3 complex, which is prevented by reversed TCR–pMHCI polarity. The requirement for canonical docking was circumvented by dissociating Lck from CD8. Thus, the consensus TCR–pMHC docking topology is mandated by T cell signaling constraints.

[1]  Johann Gottlieb or Graun,et al.  Repertoire , 2021, The Ballad-Singer in Georgian and Victorian London.

[2]  Shvetha Sankaran,et al.  Lck bound to coreceptor is less active than free Lck , 2020, Proceedings of the National Academy of Sciences.

[3]  N. L. La Gruta,et al.  MHC Restriction: Where Are We Now? , 2020, Viral immunology.

[4]  Jia-huai Wang,et al.  Structural basis of assembly of the human T cell receptor–CD3 complex , 2019, Nature.

[5]  P. Bongrand,et al.  TCR–pMHC kinetics under force in a cell-free system show no intrinsic catch bond, but a minimal encounter duration before binding , 2019, Proceedings of the National Academy of Sciences.

[6]  Nir Friedman,et al.  Molecular constraints on CDR3 for thymic selection of MHC-restricted TCRs from a random pre-selection repertoire , 2019, Nature Communications.

[7]  D. Mueller,et al.  Dynamics of the Coreceptor-LCK Interactions during T Cell Development Shape the Self-Reactivity of Peripheral CD4 and CD8 T Cells , 2019, Cell reports.

[8]  Holger Gohlke,et al.  Resolving dynamics and function of transient states in single enzyme molecules , 2018, Nature Communications.

[9]  Nicole L La Gruta,et al.  Understanding the drivers of MHC restriction of T cell receptors , 2018, Nature Reviews Immunology.

[10]  B. Evavold,et al.  CD4 T Cell Affinity Diversity Is Equally Maintained during Acute and Chronic Infection , 2018, The Journal of Immunology.

[11]  N. Cowieson,et al.  MX2: a high-flux undulator microfocus beamline serving both the chemical and macromolecular crystallography communities at the Australian Synchrotron , 2018, Journal of synchrotron radiation.

[12]  B. Evavold,et al.  Low-affinity CD4+ T cells are major responders in the primary immune response , 2016, Nature Communications.

[13]  K. Gaus,et al.  Clus-DoC: a combined cluster detection and colocalization analysis for single-molecule localization microscopy data , 2016, Molecular biology of the cell.

[14]  Kylie M. Quinn,et al.  Reversed T Cell Receptor Docking on a Major Histocompatibility Class I Complex Limits Involvement in the Immune Response. , 2016, Immunity.

[15]  Katharina Gaus,et al.  Functional role of T-cell receptor nanoclusters in signal initiation and antigen discrimination , 2016, Proceedings of the National Academy of Sciences.

[16]  James McCluskey,et al.  T cell receptor reversed polarity recognition of a self-antigen major histocompatibility complex , 2015, Nature Immunology.

[17]  Nicole L La Gruta,et al.  Paired TCRαβ analysis of virus‐specific CD8+ T cells exposes diversity in a previously defined ‘narrow’ repertoire , 2015, Immunology and cell biology.

[18]  P. Allen,et al.  Force-Regulated In Situ TCR–Peptide-Bound MHC Class II Kinetics Determine Functions of CD4+ T Cells , 2015, The Journal of Immunology.

[19]  James McCluskey,et al.  T cell antigen receptor recognition of antigen-presenting molecules. , 2015, Annual review of immunology.

[20]  N. Cowieson,et al.  MX1: a bending-magnet crystallography beamline serving both chemical and macromolecular crystallography communities at the Australian Synchrotron , 2015, Journal of synchrotron radiation.

[21]  K. Garcia,et al.  Molecular architecture of the αβ T cell receptor–CD3 complex , 2014, Proceedings of the National Academy of Sciences.

[22]  R. Zamoyska,et al.  Ligand engaged TCR is triggered by Lck not associated with CD8 coreceptor , 2014, Nature Communications.

[23]  S. Jameson,et al.  The self-obsession of T cells: how TCR signaling thresholds affect fate 'decisions' and effector function , 2014, Nature Immunology.

[24]  Cheng Zhu,et al.  Accumulation of Dynamic Catch Bonds between TCR and Agonist Peptide-MHC Triggers T Cell Signaling , 2014, Cell.

[25]  R. Mariuzza,et al.  T cell receptor bias for MHC: co-evolution or co-receptors? , 2014, Cellular and Molecular Life Sciences.

[26]  F. V. Laethem,et al.  Lck Availability during Thymic Selection Determines the Recognition Specificity of the T Cell Repertoire , 2013, Cell.

[27]  Philip R. Evans,et al.  How good are my data and what is the resolution? , 2013, Acta crystallographica. Section D, Biological crystallography.

[28]  A. Singer,et al.  MHC restriction is imposed on a diverse T cell receptor repertoire by CD4 and CD8 co-receptors during thymic selection. , 2012, Trends in immunology.

[29]  P. Andrew Karplus,et al.  Linking Crystallographic Model and Data Quality , 2012, Science.

[30]  R. Mariuzza,et al.  Crystal structure of a complete ternary complex of T-cell receptor, peptide–MHC, and CD4 , 2012, Proceedings of the National Academy of Sciences.

[31]  A. Singer,et al.  αβ T cell receptors that do not undergo major histocompatibility complex-specific thymic selection possess antibody-like recognition specificities. , 2012, Immunity.

[32]  K. Garcia,et al.  T cell receptor signaling is limited by docking geometry to peptide-major histocompatibility complex. , 2011, Immunity.

[33]  L. Stern,et al.  A role for differential variable gene pairing in creating T cell receptors specific for unique major histocompatibility ligands. , 2011, Immunity.

[34]  Randy J. Read,et al.  Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.

[35]  K. Wucherpfennig,et al.  A highly tilted binding mode by a self-reactive T cell receptor results in altered engagement of peptide and MHC , 2011, The Journal of experimental medicine.

[36]  B. Evavold,et al.  High prevalence of low affinity peptide–MHC II tetramer–negative effectors during polyclonal CD4+ T cell responses , 2011, The Journal of experimental medicine.

[37]  P. Doherty,et al.  Primary CTL response magnitude in mice is determined by the extent of naive T cell recruitment and subsequent clonal expansion. , 2010, The Journal of clinical investigation.

[38]  Cheng Zhu,et al.  The kinetics of two dimensional TCR and pMHC interactions determine T cell responsiveness , 2010, Nature.

[39]  Philippa Marrack,et al.  Crossreactive T Cells spotlight the germline rules for alphabeta T cell-receptor interactions with MHC molecules. , 2008, Immunity.

[40]  Jennifer Maynard,et al.  Structural evidence for a germline-encoded T cell receptor–major histocompatibility complex interaction 'codon' , 2007, Nature Immunology.

[41]  Marion Pepper,et al.  Naive CD4(+) T cell frequency varies for different epitopes and predicts repertoire diversity and response magnitude. , 2007, Immunity.

[42]  Randy J. Read,et al.  Phaser crystallographic software , 2007, Journal of applied crystallography.

[43]  T. Zal,et al.  Nonstimulatory peptides contribute to antigen-induced CD8–T cell receptor interaction at the immunological synapse , 2005, Nature Immunology.

[44]  K. Wucherpfennig,et al.  Unconventional topology of self peptide–major histocompatibility complex binding by a human autoimmune T cell receptor , 2005, Nature Immunology.

[45]  L. K. Ely,et al.  The CDR3 regions of an immunodominant T cell receptor dictate the 'energetic landscape' of peptide-MHC recognition , 2005, Nature Immunology.

[46]  T. Zal,et al.  Inhibition of T cell receptor-coreceptor interactions by antagonist ligands visualized by live FRET imaging of the T-hybridoma immunological synapse. , 2002, Immunity.

[47]  R. Germain,et al.  Divergent changes in the sensitivity of maturing T cells to structurally related ligands underlies formation of a useful T cell repertoire. , 1999, Immunity.

[48]  S. Jameson,et al.  Preselection Thymocytes Are More Sensitive to T Cell Receptor Stimulation Than Mature T Cells , 1998, The Journal of experimental medicine.

[49]  Kristin A. Hogquist,et al.  T cell receptor antagonist peptides induce positive selection , 1994, Cell.

[50]  R. Klausner,et al.  Regulation of T cell receptor expression in immature CD4+CD8+ thymocytes by p56lck tyrosine kinase: basis for differential signaling by CD4 and CD8 in immature thymocytes expressing both coreceptor molecules , 1993, The Journal of experimental medicine.

[51]  P. Marrack,et al.  Antigen recognition properties of mutant V beta 3+ T cell receptors are consistent with an immunoglobulin-like structure for the receptor , 1993, The Journal of experimental medicine.

[52]  R. Perlmutter,et al.  Interaction of the unique N-terminal region of tyrosine kinase p56 lck with cytoplasmic domains of CD4 and CD8 is mediated by cysteine motifs , 1990, Cell.

[53]  J. Bluestone,et al.  Substitution at residue 227 of H–2 class I molecules abrogates recognition by CD8-dependent, but not CD8-independent, cytotoxic T lymphocytes , 1989, Nature.

[54]  B. Ripley Tests of 'Randomness' for Spatial Point Patterns , 1979 .

[55]  P. Emsley,et al.  Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.

[56]  A. Singer,et al.  Deletion of CD4 and CD8 coreceptors permits generation of alphabetaT cells that recognize antigens independently of the MHC. , 2007, Immunity.

[57]  Jeff Holst,et al.  Generation of T-cell receptor retrogenic mice , 2006, Nature Protocols.

[58]  James McCluskey,et al.  A structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity. , 2003, Immunity.

[59]  M. Greene,et al.  Control of MHC restriction by TCR Valpha CDR1 and CDR2. , 1996, Science.