A transformation class for spatio-temporal survival data with a cure fraction

We propose a hierarchical Bayesian methodology to model spatially or spatio-temporal clustered survival data with possibility of cure. A flexible continuous transformation class of survival curves indexed by a single parameter is used. This transformation model is a larger class of models containing two special cases of the well-known existing models: the proportional hazard and the proportional odds models. The survival curve is modeled as a function of a baseline cumulative distribution function, cure rates, and spatio-temporal frailties. The cure rates are modeled through a covariate link specification and the spatial frailties are specified using a conditionally autoregressive model with time-varying parameters resulting in a spatio-temporal formulation. The likelihood function is formulated assuming that the single parameter controlling the transformation is unknown and full conditional distributions are derived. A model with a non-parametric baseline cumulative distribution function is implemented and a Markov chain Monte Carlo algorithm is specified to obtain the usual posterior estimates, smoothed by regional level maps of spatio-temporal frailties and cure rates. Finally, we apply our methodology to melanoma cancer survival times for patients diagnosed in the state of New Jersey between 2000 and 2007, and with follow-up time until 2007.

[1]  L. Vogt Statistics For Spatial Data , 2016 .

[2]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[3]  Gauss M. Cordeiro,et al.  A unified view on lifetime distributions arising from selection mechanisms , 2011, Comput. Stat. Data Anal..

[4]  R. Tiwari,et al.  Estimating the personal cure rate of cancer patients using population-based grouped cancer survival data , 2011, Statistical methods in medical research.

[5]  Thomas H Scheike,et al.  Flexible survival regression modelling , 2010, Statistical methods in medical research.

[6]  Guosheng Yin,et al.  Bayesian transformation cure frailty models with multivariate failure time data , 2008, Statistics in medicine.

[7]  Bradley P Carlin,et al.  Flexible Cure Rate Modeling Under Latent Activation Schemes , 2007, Journal of the American Statistical Association.

[8]  Dipak K. Dey,et al.  Semiparametric Proportional Odds Models for Spatially Correlated Survival Data , 2005, Lifetime data analysis.

[9]  J G Ibrahim,et al.  Estimating Cure Rates From Survival Data , 2003, Journal of the American Statistical Association.

[10]  L. Madden,et al.  A generalized linear modeling approach for characterizing disease incidence in a spatial hierarchy. , 2003, Phytopathology.

[11]  A. Gelfand,et al.  Proper multivariate conditional autoregressive models for spatial data analysis. , 2003, Biostatistics.

[12]  Bradley P. Carlin,et al.  Bayesian measures of model complexity and fit , 2002 .

[13]  D Böhning,et al.  Non-parametric maximum likelihood estimators for disease mapping. , 2000, Statistics in medicine.

[14]  J. P. Sy,et al.  Estimation in a Cox Proportional Hazards Cure Model , 2000, Biometrics.

[15]  Joseph G. Ibrahim,et al.  A New Bayesian Model For Survival Data With a Surviving Fraction , 1999 .

[16]  Andrew Gelman,et al.  General methods for monitoring convergence of iterative simulations , 1998 .

[17]  Bradley P. Carlin,et al.  Hierarchical Spatio-Temporal Mapping of Disease Rates , 1997 .

[18]  Z. Ying,et al.  Analysis of transformation models with censored data , 1995 .

[19]  A. Gelfand,et al.  Bayesian analysis of proportional hazards models built from monotone functions. , 1995, Biometrics.

[20]  Hong Chang,et al.  Model Determination Using Predictive Distributions with Implementation via Sampling-Based Methods , 1992 .

[21]  D. Rubin,et al.  Inference from Iterative Simulation Using Multiple Sequences , 1992 .

[22]  Noel A Cressie,et al.  Statistics for Spatial Data. , 1992 .

[23]  S. Bennett,et al.  Analysis of survival data by the proportional odds model. , 1983, Statistics in medicine.

[24]  D. Clayton A model for association in bivariate life tables and its application in epidemiological studies of familial tendency in chronic disease incidence , 1978 .

[25]  J. Besag Spatial Interaction and the Statistical Analysis of Lattice Systems , 1974 .

[26]  David R. Cox,et al.  Regression models and life tables (with discussion , 1972 .

[27]  Joseph Berkson,et al.  Survival Curve for Cancer Patients Following Treatment , 1952 .