Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis
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[1] L. Isaksson,et al. Functional interplay between the jaw domain of bacterial RNA polymerase and allele-specific residues in the product RNA-binding pocket. , 2006, Journal of molecular biology.
[2] B. Coulombe,et al. Structural Perspective on Mutations Affecting the Function of Multisubunit RNA Polymerases , 2006, Microbiology and Molecular Biology Reviews.
[3] J. Symerský,et al. Regulation through the RNA Polymerase Secondary Channel , 2006, Journal of Biological Chemistry.
[4] Naohiro Matsugaki,et al. Structural basis for transcription inhibition by tagetitoxin , 2005, Nature Structural &Molecular Biology.
[5] K. Murakami,et al. Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit. , 2005, Journal of molecular biology.
[6] T. Tahirov,et al. Structural basis of transcription inhibition by antibiotic streptolydigin. , 2005, Molecular cell.
[7] A. D. Clark,et al. Inhibition of Bacterial RNA Polymerase by Streptolydigin: Stabilization of a Straight-Bridge-Helix Active-Center Conformation , 2005, Cell.
[8] Wei Yang,et al. Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis , 2005, Cell.
[9] Arkady Mustaev,et al. A Ratchet Mechanism of Transcription Elongation and Its Control , 2005, Cell.
[10] Y. Nakamura,et al. Localization ofnusA-suppressing amino acid substitutions in the conserved regions of theβ′ subunit ofEscherichia coli RNA polymerase , 1996, Molecular and General Genetics MGG.
[11] P. Cramer,et al. Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. , 2004, Molecular cell.
[12] Kevin Cowtan,et al. research papers Acta Crystallographica Section D Biological , 2005 .
[13] D. Bushnell,et al. Structural Basis of Transcription Nucleotide Selection by Rotation in the RNA Polymerase II Active Center , 2004, Cell.
[14] D. Vassylyev,et al. Discrimination against Deoxyribonucleotide Substrates by Bacterial RNA Polymerase* , 2004, Journal of Biological Chemistry.
[15] R. Landick,et al. Downstream DNA selectively affects a paused conformation of human RNA polymerase II. , 2004, Journal of molecular biology.
[16] Shigeyuki Yokoyama,et al. Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription , 2004, Cell.
[17] Jennifer L. Knight,et al. Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel. , 2004, Molecular cell.
[18] S. Yokoyama,et al. Structural Basis for Transcription Regulation by Alarmone ppGpp , 2004, Cell.
[19] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[20] O. Laptenko,et al. Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase , 2003, The EMBO journal.
[21] P. Cramer,et al. Architecture of the RNA Polymerase II-TFIIS Complex and Implications for mRNA Cleavage , 2003, Cell.
[22] Peter Briggs,et al. A graphical user interface to the CCP4 program suite. , 2003, Acta crystallographica. Section D, Biological crystallography.
[23] S. Nechaev,et al. Mutations of Bacterial RNA Polymerase Leading to Resistance to Microcin J25* , 2002, The Journal of Biological Chemistry.
[24] V. Markovtsov,et al. Swing-gate model of nucleotide entry into the RNA polymerase active center. , 2002, Molecular cell.
[25] S. Yokoyama,et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution , 2002, Nature.
[26] Patrick Cramer,et al. Structural basis of transcription: α-Amanitin–RNA polymerase II cocrystal at 2.8 Å resolution , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[27] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[28] Patrick Cramer,et al. Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution. , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[29] K.,et al. Biochemistry of Deoxyribonucleic Acid-defective Amber Mutants of Bacteriophage T4 , 2002 .
[30] R. Farías,et al. Escherichia coli RNA Polymerase Is the Target of the Cyclopeptide Antibiotic Microcin J25 , 2001, Journal of bacteriology.
[31] B. Séraphin,et al. The tandem affinity purification (TAP) method: a general procedure of protein complex purification. , 2001, Methods.
[32] P. Cramer,et al. Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution , 2001, Science.
[33] P. Cramer,et al. Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution , 2001, Science.
[34] G N Murshudov,et al. Use of TLS parameters to model anisotropic displacements in macromolecular refinement. , 2001, Acta crystallographica. Section D, Biological crystallography.
[35] P. Cramer,et al. Architecture of RNA polymerase II and implications for the transcription mechanism. , 2000, Science.
[36] M. Kashlev,et al. The 8-Nucleotide-long RNA:DNA Hybrid Is a Primary Stability Determinant of the RNA Polymerase II Elongation Complex* , 2000, The Journal of Biological Chemistry.
[37] K. Severinov,et al. Mutations in and Monoclonal Antibody Binding to Evolutionary Hypervariable Region of Escherichia coli RNA Polymerase β′ Subunit Inhibit Transcript Cleavage and Transcript Elongation* , 1998, The Journal of Biological Chemistry.
[38] J. Greenblatt,et al. Stimulation of Transcription by Mutations Affecting Conserved Regions of RNA Polymerase II , 1998, Journal of bacteriology.
[39] M. Chamberlin,et al. Basic mechanisms of transcript elongation and its regulation. , 1997, Annual review of biochemistry.
[40] Z. Otwinowski,et al. Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.
[41] D. Barford. Molecular mechanisms of the protein serine/threonine phosphatases. , 1996, Trends in biochemical sciences.
[42] S. Lippard,et al. Repair of cisplatin--DNA adducts by the mammalian excision nuclease. , 1996, Biochemistry.
[43] K. Brew,et al. Mutational analysis of the catalytic subunit of muscle protein phosphatase-1. , 1996, Biochemistry.
[44] V. Markovtsov,et al. Protein-RNA interactions in the active center of transcription elongation complex. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[45] A. Sentenac,et al. Mutations in the alpha‐amanitin conserved domain of the largest subunit of yeast RNA polymerase III affect pausing, RNA cleavage and transcriptional transitions. , 1996, The EMBO journal.
[46] Y. Nakamura,et al. Localization of nusA-suppressing amino acid substitutions in the conserved regions of the beta' subunit of Escherichia coli RNA polymerase. , 1996, Molecular & general genetics : MGG.
[47] C. Price,et al. Streptolydigin resistance can be conferred by alterations to either the beta or beta' subunits of Bacillus subtilis RNA polymerase. , 1995, The Journal of biological chemistry.
[48] R. Landick,et al. Termination-altering amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation. , 1994, Genes & development.
[49] J. Lindsley,et al. Use of single-turnover kinetics to study bulky adduct bypass by T7 DNA polymerase. , 1994, Biochemistry.
[50] D. Lilley,et al. DNA replication, 2nd edn , 1992 .
[51] S. Borukhov,et al. Mapping of a contact for the RNA 3' terminus in the largest subunit of RNA polymerase. , 1991, The Journal of biological chemistry.
[52] R. Young,et al. Mutations in a conserved region of RNA polymerase II influence the accuracy of mRNA start site selection. , 1991, Molecular and cellular biology.
[53] R. Young,et al. Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. , 1991, The Journal of biological chemistry.
[54] Michael Shales,et al. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases , 1985, Cell.
[55] L. Gudas,et al. Ribonucleotide reductase activity and deoxyribonucleoside triphosphate metabolism during the cell cycle of S49 wild-type and mutant mouse T-lymphoma cells. , 1985, The Journal of biological chemistry.
[56] P. Reichard. Ribonucleotide reductase and deoxyribonucleotide pools. , 1985, Basic life sciences.
[57] M. Chamberlin,et al. Ribonucleic acid chain elongation by Escherichia coli ribonucleic acid polymerase. I. Isolation of ternary complexes and the kinetics of elongation. , 1974, The Journal of biological chemistry.
[58] C. Mathews. Biochemistry of deoxyribonucleic acid-defective amber mutants of bacteriophage T4. 3. Nucleotide pools. , 1972, The Journal of biological chemistry.
[59] Fox Cf,et al. ENZYMATIC SYNTHESIS OF RIBONUCLEIC ACID. II. PROPERTIES OF THE DEOXYRIBONUCLEIC ACID-PRIMED REACTION WITH MICROCOCCUS LYSODEIKTICUS RIBONUCLEIC ACID POLYMERASE. , 1964 .
[60] S. Weiss,et al. ENZYMATIC SYNTHESIS OF RIBONUCLEIC ACID. II. PROPERTIES OF THE DEOXYRIBONUCLEIC ACID-PRIMED REACTION WITH MICROCOCCUS LYSODEIKTICUS RIBONUCLEIC ACID POLYMERASE. , 1964, The Journal of biological chemistry.
[61] J. Hurwitz,et al. The role of deoxyribonucleic acid in ribonucleic acid synthesis. I. The purification and properties of ribonucleic acid polymerase. , 1962, The Journal of biological chemistry.
[62] M. Chamberlin,et al. DEOXYRIBONUCLEIC ACID-DIRECTED SYNTHESIS OF RIBONUCLEIC ACID BY AN ENZYME FROM ESCHERICHIA COLI , 1962 .
[63] M. Chamberlin,et al. Deoxyribo ucleic acid-directed synthesis of ribonucleic acid by an enzyme from Escherichia coli. , 1962, Proceedings of the National Academy of Sciences of the United States of America.