Adaptive Multiresolution Techniques for Subcellular Protein Location Classification

We propose an adaptive multiresolution (MR) approach for classification of fluorescence microscopy images of subcellular protein locations, providing biologically relevant information. These images have highly localized features both in space and frequency which naturally leads us to MR tools. Moreover, as the goal of the classification system is to distinguish between various protein classes, we aim for features adapted to individual proteins. These two requirements further lead us to adaptive MR tools. We start with a simple classification system consisting of Haralick texture feature computation followed by a maximum-likelihood classifier, and demonstrate that, by adding an MR block in front, we are able to raise the average classification accuracy by roughly 10%. We conclude that selecting features in MR subspaces allows us to custom-build discriminative feature sets for fluorescence microscopy images of protein subcellular location images

[1]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[2]  Kai Huang,et al.  Feature reduction for improved recognition of subcellular location patterns in fluorescence microscope images , 2003, SPIE BiOS.

[3]  Robert F Murphy,et al.  Automated Interpretation of Protein Subcellular Location Patterns: Implications for Early Cancer Detection and Assessment , 2004, Annals of the New York Academy of Sciences.

[4]  Ronald R. Coifman,et al.  Local discriminant bases and their applications , 1995, Journal of Mathematical Imaging and Vision.

[5]  Kai Huang,et al.  Boosting accuracy of automated classification of fluorescence microscope images for location proteomics , 2004, BMC Bioinformatics.

[6]  Robert F. Murphy,et al.  Robust classification of subcellular location patterns in fluorescence microscope images , 2002, Proceedings of the 12th IEEE Workshop on Neural Networks for Signal Processing.

[7]  B. V. K. Vijaya Kumar,et al.  Wavelet packet correlation methods in biometrics , 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..