Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration
暂无分享,去创建一个
Luis Concha | Benoit Scherrer | Alonso Ramirez-Manzanares | Ricardo Coronado-Leija | Gilberto Rojas-Vite | Omar Narvaez-Delgado | Jose L. Marroquin | Ramsés Noguez-Imm | Marcos L. Aranda | Jorge Larriva-Sahd | L. Concha | J. Marroquín | B. Scherrer | J. Larriva-Sahd | Omar Narvaez-Delgado | Gilberto Rojas-Vite | Ricardo Coronado-Leija | Ramsés Noguez-Imm | Alonso Ramírez-Manzanares
[1] Alan Connelly,et al. SIFT: Spherical-deconvolution informed filtering of tractograms , 2013, NeuroImage.
[2] Rachid Deriche,et al. Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI , 2014, IEEE Transactions on Medical Imaging.
[3] M. Röyttä,et al. Autolytic changes of human white matter: an electron microscopic and electrophoretic study. , 1987, Experimental and molecular pathology.
[4] C. Westin,et al. An introduction to diffusion tensor image analysis. , 2011, Neurosurgery clinics of North America.
[5] Jan Sijbers,et al. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data , 2014, NeuroImage.
[6] Alan Peters,et al. The Fixation of Central Nervous Tissue and the Analysis of Electron Micrographs of the Neuropil, with Special Reference to the Cerebral Cortex , 1970 .
[7] Teemu Laitinen,et al. Diffusion tensor imaging of hippocampal network plasticity , 2013, Brain Structure and Function.
[8] Richard Bowtell,et al. Microstructural imaging of the human brain with a ‘super-scanner’: 10 key advantages of ultra-strong gradients for diffusion MRI , 2018, NeuroImage.
[9] Daniel C. Alexander,et al. NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain , 2012, NeuroImage.
[10] M. Budde,et al. Quantification of anisotropy and fiber orientation in human brain histological sections , 2012, Front. Integr. Neurosci..
[11] Michael Brady,et al. Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.
[12] Mara Cercignani,et al. Brain microstructure by multi-modal MRI: Is the whole greater than the sum of its parts? , 2017, NeuroImage.
[13] C. Beaulieu,et al. The basis of anisotropic water diffusion in the nervous system – a technical review , 2002, NMR in biomedicine.
[14] L. Concha,et al. A macroscopic view of microstructure: Using diffusion-weighted images to infer damage, repair, and plasticity of white matter , 2014, Neuroscience.
[15] R W Guillery,et al. European Neuroscience Association The changing pattern of fibre bundles that pass through the optic chiasm of mice , 1998, The European journal of neuroscience.
[16] P. Basser,et al. Axcaliber: A method for measuring axon diameter distribution from diffusion MRI , 2008, Magnetic resonance in medicine.
[17] Alejandra Sierra,et al. Automated 3D Axonal Morphometry of White Matter , 2018 .
[18] Mitra,et al. Multiple wave-vector extensions of the NMR pulsed-field-gradient spin-echo diffusion measurement. , 1995, Physical review. B, Condensed matter.
[19] H. Akaike. A new look at the statistical model identification , 1974 .
[20] Jennifer A McNab,et al. Double diffusion encoding MRI for the clinic , 2018, Magnetic resonance in medicine.
[21] Daniel C Alexander,et al. Multiple‐Fiber Reconstruction Algorithms for Diffusion MRI , 2005, Annals of the New York Academy of Sciences.
[22] Glen Jeffery,et al. Variations in the architecture and development of the vertebrate optic chiasm , 2005, Progress in Retinal and Eye Research.
[23] Brian B. Avants,et al. N4ITK: Improved N3 Bias Correction , 2010, IEEE Transactions on Medical Imaging.
[24] Susumu Mori,et al. The role of myelination in measures of white matter integrity: Combination of diffusion tensor imaging and two-photon microscopy of CLARITY intact brains , 2017, NeuroImage.
[25] Mark F. Lythgoe,et al. Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison , 2012, NeuroImage.
[26] Stephen M. Smith,et al. Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.
[27] Simon K. Warfield,et al. Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging , 2017, IPMI.
[28] Julien Cohen-Adad,et al. White Matter Microscopy Database , 2016 .
[29] M. Esiri,et al. Axonal loss in multiple sclerosis: a pathological survey of the corticospinal and sensory tracts. , 2004, Brain : a journal of neurology.
[30] Carl-Fredrik Westin,et al. Processing and visualization for diffusion tensor MRI , 2002, Medical Image Anal..
[31] Tomás Paus,et al. Imaging microstructure in the living human brain: A viewpoint , 2017, NeuroImage.
[32] Leo Breiman,et al. Bagging Predictors , 1996, Machine Learning.
[33] Julien Cohen-Adad,et al. AxonSeg: Open Source Software for Axon and Myelin Segmentation and Morphometric Analysis , 2016, Front. Neuroinform..
[34] Ahmad Raza Khan,et al. 3D structure tensor analysis of light microscopy data for validating diffusion MRI , 2015, NeuroImage.
[35] Stephen M. Smith,et al. DTI measures in crossing-fibre areas: Increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease , 2011, NeuroImage.
[36] Sébastien Ourselin,et al. A Survey of Methods for 3D Histology Reconstruction , 2018, Medical Image Anal..
[37] A. Connelly,et al. Determination of the appropriate b value and number of gradient directions for high‐angular‐resolution diffusion‐weighted imaging , 2013, NMR in biomedicine.
[38] Stephan Saalfeld,et al. Globally optimal stitching of tiled 3D microscopic image acquisitions , 2009, Bioinform..
[39] Jean-Philippe Thiran,et al. Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data , 2015, NeuroImage.
[40] Junfeng Zhu,et al. Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata , 2014, NeuroImage.
[41] A. Schwartzman,et al. Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion‐compartment imaging (DIAMOND) , 2016, Magnetic resonance in medicine.
[42] Philippe Pouliot,et al. Fully automated dual-resolution serial optical coherence tomography aimed at diffusion MRI validation in whole mouse brains , 2018, Neurophotonics.
[43] Rachid Deriche,et al. Diffusion MRI microstructure models with in vivo human brain Connectom data: results from a multi-group comparison , 2016, 1604.07287.
[44] Luis Concha,et al. The acute phase of Wallerian degeneration: Longitudinal diffusion tensor imaging of the fornix following temporal lobe surgery , 2013, NeuroImage.
[45] M. Catani,et al. Can spherical deconvolution provide more information than fiber orientations? Hindrance modulated orientational anisotropy, a true‐tract specific index to characterize white matter diffusion , 2013, Human brain mapping.
[46] Oliver Bücker,et al. Estimating Fiber Orientation Distribution Functions in 3D-Polarized Light Imaging , 2016, Front. Neuroanat..
[47] Thomas R. Knösche,et al. White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI , 2013, NeuroImage.
[48] Thomas R. Knösche,et al. Beyond fractional anisotropy: Extraction of bundle-specific structural metrics from crossing fiber models , 2014, NeuroImage.
[49] James Gee,et al. Spinal cord diffusion tensor imaging and fiber tracking can identify white matter tract disruption and glial scar orientation following lateral funiculotomy. , 2005, Journal of neurotrauma.
[50] Martin Bech,et al. Validation strategies for the interpretation of microstructure imaging using diffusion MRI , 2018, NeuroImage.
[51] Bennett A. Landman,et al. Comparison of 3D orientation distribution functions measured with confocal microscopy and diffusion MRI , 2016, NeuroImage.
[52] Tim B. Dyrby,et al. Orientationally invariant indices of axon diameter and density from diffusion MRI , 2010, NeuroImage.
[53] Jan Sijbers,et al. Denoising of diffusion MRI using random matrix theory , 2016, NeuroImage.
[54] A. Dale,et al. Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain , 2010, PloS one.
[55] R. Caminiti,et al. The diameter of cortical axons depends both on the area of origin and target. , 2014, Cerebral cortex.
[56] Sune Nørhøj Jespersen,et al. White matter biomarkers from diffusion MRI , 2018 .
[57] Jacques-Donald Tournier,et al. Diffusion tensor imaging and beyond , 2011, Magnetic resonance in medicine.
[58] R E Snyder,et al. Changes in water diffusion due to Wallerian degeneration in peripheral nerve , 1996, Magnetic resonance in medicine.
[59] Alejandra Sierra,et al. Quantification of anisotropy and orientation in 3D electron microscopy and diffusion tensor imaging in injured rat brain , 2018, NeuroImage.
[60] Stuart Crozier,et al. Apparent Fibre Density: A novel measure for the analysis of diffusion-weighted magnetic resonance images , 2012, NeuroImage.
[61] Alex J. de Crespigny,et al. An approach to high resolution diffusion tensor imaging in fixed primate brain , 2007, NeuroImage.
[62] Shu-Wei Sun,et al. Diffusion tensor imaging detects and differentiates axon and myelin degeneration in mouse optic nerve after retinal ischemia , 2003, NeuroImage.
[63] R M Henkelman,et al. MR properties of rat sciatic nerve following trauma , 2001, Magnetic resonance in medicine.
[64] Luis Concha,et al. Diffusion tensor imaging of time-dependent axonal and myelin degradation after corpus callosotomy in epilepsy patients , 2006, NeuroImage.
[65] J. Michael Tyszka,et al. Statistical diffusion tensor histology reveals regional dysmyelination effects in the shiverer mouse mutant , 2006, NeuroImage.
[66] Derek K. Jones,et al. Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging , 2013, Human brain mapping.
[67] W. Baaré,et al. An ex vivo imaging pipeline for producing high‐quality and high‐resolution diffusion‐weighted imaging datasets , 2011, Human brain mapping.
[68] Luis Concha,et al. In Vivo Diffusion Tensor Imaging and Histopathology of the Fimbria-Fornix in Temporal Lobe Epilepsy , 2010, The Journal of Neuroscience.
[69] Alonso Ramirez-Manzanares,et al. Estimation of individual axon bundle properties by a Multi‐Resolution Discrete‐Search method , 2017, Medical Image Anal..
[70] W. Denk,et al. Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure , 2004, PLoS biology.
[71] P. Basser,et al. MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.
[72] Joseph A. Helpern,et al. White matter characterization with diffusional kurtosis imaging , 2011, NeuroImage.
[73] Hsiao-Fang Liang,et al. Radial diffusivity predicts demyelination in ex vivo multiple sclerosis spinal cords , 2011, NeuroImage.
[74] J. Veraart,et al. Along-axon diameter variation and axonal orientation dispersion revealed with 3D electron microscopy: implications for quantifying brain white matter microstructure with histology and diffusion MRI , 2019, Brain Structure and Function.
[75] Johannes E. Schindelin,et al. Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.
[76] Kanji Takahashi,et al. High intraocular pressure-induced ischemia and reperfusion injury in the optic nerve and retina in rats , 1996, Graefe's Archive for Clinical and Experimental Ophthalmology.
[77] P. Mitra,et al. Conventions and nomenclature for double diffusion encoding NMR and MRI , 2016, Magnetic resonance in medicine.
[78] Hui Zhang,et al. Imaging brain microstructure with diffusion MRI: practicality and applications , 2019, NMR in biomedicine.
[79] Flavio Dell'Acqua,et al. Structural human brain networks: hot topics in diffusion tractography. , 2012, Current opinion in neurology.
[80] M. Ptito,et al. Contrast and stability of the axon diameter index from microstructure imaging with diffusion MRI , 2012, Magnetic resonance in medicine.
[81] Mara Cercignani,et al. Quantitative MRI of the Brain : Principles of Physical Measurement, Second edition , 2018 .
[82] Sune Nørhøj Jespersen,et al. White matter biomarkers from diffusion MRI. , 2018, Journal of magnetic resonance.
[83] Olaf Sporns,et al. THE HUMAN CONNECTOME: A COMPLEX NETWORK , 2011, Schizophrenia Research.
[84] Shu-Wei Sun,et al. Evolving Wallerian degeneration after transient retinal ischemia in mice characterized by diffusion tensor imaging , 2008, NeuroImage.
[85] R. E. Schmidt,et al. Toward accurate diagnosis of white matter pathology using diffusion tensor imaging , 2007, Magnetic resonance in medicine.