The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology.
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Vincent Noireaux | Ryan Marshall | V. Noireaux | J. Garamella | Ryan Marshall | Jonathan Garamella | Mark Rustad | M. Rustad | Jonathan Garamella
[1] C. Wilson,et al. Laser-mediated, site-specific inactivation of RNA transcripts. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[2] D. Baigl,et al. Cell‐Free Preparation of Functional and Triggerable Giant Proteoliposomes , 2013, Chembiochem : a European journal of chemical biology.
[3] Vincent Noireaux,et al. Coarse-grained dynamics of protein synthesis in a cell-free system. , 2011, Physical review letters.
[4] M. Record,et al. Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo. , 1991, Journal of molecular biology.
[5] G. Church,et al. Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. , 2003, Genome research.
[6] Tetsuya Yomo,et al. Expression of a cascading genetic network within liposomes , 2004, FEBS letters.
[7] A. Plückthun,et al. In vitro selection and evolution of functional proteins by using ribosome display. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[8] Dan S. Tawfik,et al. Man-made cell-like compartments for molecular evolution , 1998, Nature Biotechnology.
[9] J. L. Le Caer,et al. The asiA gene of bacteriophage T4 codes for the anti-sigma 70 protein , 1993, Journal of bacteriology.
[10] N. Packard,et al. Preparation of amino acid mixtures for cell-free expression systems , 2022 .
[11] Michael C. Jewett,et al. Non-standard amino acid incorporation into proteins using Escherichia coli cell-free protein synthesis , 2014, Front. Chem..
[12] Zachary Z. Sun,et al. Characterizing and prototyping genetic networks with cell-free transcription-translation reactions. , 2015, Methods.
[13] Vincent Noireaux,et al. Development of an artificial cell, from self-organization to computation and self-reproduction , 2011 .
[14] A. Minton. Implications of macromolecular crowding for protein assembly. , 2000, Current opinion in structural biology.
[15] U. Alon. Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.
[16] R. Bar-Ziv,et al. Cell-free protein synthesis and assembly on a biochip. , 2012, Nature nanotechnology.
[17] Bradley C. Bundy,et al. Escherichia coli‐based cell‐free synthesis of virus‐like particles , 2008, Biotechnology and bioengineering.
[18] Christophe Danelon,et al. Linking genotype and phenotype in protein synthesizing liposomes with external supply of resources. , 2013, ACS synthetic biology.
[19] S. Mansy,et al. Cellular imitations. , 2012, Current opinion in chemical biology.
[20] Vincent Noireaux,et al. A vesicle bioreactor as a step toward an artificial cell assembly. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[21] Mingyue He,et al. Cell-free protein synthesis: applications in proteomics and biotechnology. , 2008, New biotechnology.
[22] Vincent Noireaux,et al. Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system , 2010, Journal of biological engineering.
[23] Heng Huang,et al. Stable, high‐affinity streptavidin monomer for protein labeling and monovalent biotin detection , 2013, Biotechnology and bioengineering.
[24] Vincent Noireaux,et al. Programmable on-chip DNA compartments as artificial cells , 2014, Science.
[25] Junhao Yang,et al. Cell-free production of scFv fusion proteins: an efficient approach for personalized lymphoma vaccines. , 2007, Blood.
[26] A. Piruska,et al. Enhanced transcription rates in membrane-free protocells formed by coacervation of cell lysate , 2013, Proceedings of the National Academy of Sciences.
[27] G. Wenzel,et al. In vitro selection , 1993 .
[28] Henrike Niederholtmeyer,et al. Implementation of cell-free biological networks at steady state , 2013, Proceedings of the National Academy of Sciences.
[29] Tomio Ogasawara,et al. A cell-free protein synthesis system for high-throughput proteomics , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[30] Takuya Ueda,et al. Protein synthesis by pure translation systems. , 2005, Methods.
[31] Aaron K. Sato,et al. A simplified and robust protocol for immunoglobulin expression in E scherichia coli cell‐free protein synthesis systems , 2015, Biotechnology progress.
[32] N. Fujita,et al. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase. , 2000, Nucleic acids research.
[33] Marc Dreyfus,et al. Troubleshooting coupled in vitro transcription–translation system derived from Escherichia coli cells: synthesis of high-yield fully active proteins , 2006, Nucleic acids research.
[34] H. Yim,et al. Molecular characterization of the promoter of osmY, an rpoS-dependent gene , 1994, Journal of bacteriology.
[35] V. Noireaux,et al. Genetically expanded cell‐free protein synthesis using endogenous pyrrolysyl orthogonal translation system , 2015, Biotechnology and bioengineering.
[36] Joseph D Puglisi,et al. Quantitative polysome analysis identifies limitations in bacterial cell-free protein synthesis. , 2005, Biotechnology and bioengineering.
[37] Vincent Noireaux,et al. Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70 , 2010, Journal of biological engineering.
[38] Vincent Noireaux,et al. Assembly of MreB filaments on liposome membranes: a synthetic biology approach. , 2012, ACS synthetic biology.
[39] H. Bujard,et al. Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. , 1997, Nucleic acids research.
[40] D. Geyl,et al. In Vitro Biosynthesis of , 1991 .
[41] T. Baker,et al. Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. , 2003, Molecular cell.
[42] Sophie Pautot,et al. Engineering asymmetric vesicles , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[43] M. Kainosho,et al. Cell-free protein production for NMR studies. , 2012, Methods in molecular biology.
[44] C. S. Devine,et al. The T7 phage gene 10 leader RNA, a ribosome-binding site that dramatically enhances the expression of foreign genes in Escherichia coli. , 1988, Gene.
[45] J. M. Pratt,et al. A coupled in vitro transcription‐translation system for the exclusive synthesis of polypeptides expressed from the T7 promoter , 1991, FEBS letters.
[46] Cem Albayrak,et al. Direct polymerization of proteins. , 2014, ACS synthetic biology.
[47] Christophe Vieu,et al. α-Hemolysin pore formation into a supported phospholipid bilayer using cell-free expression. , 2011, Biochimica et biophysica acta.
[48] Paul S. Freemont,et al. Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology , 2013, Nucleic acids research.
[49] Yutetsu Kuruma,et al. Biosynthesis of proteins inside liposomes. , 2010, Methods in molecular biology.
[50] G. Ulrich Nienhaus,et al. mRuby, a Bright Monomeric Red Fluorescent Protein for Labeling of Subcellular Structures , 2009, PloS one.
[51] Vincent Noireaux,et al. Genome replication, synthesis, and assembly of the bacteriophage T7 in a single cell-free reaction. , 2012, ACS synthetic biology.
[52] Michael C Jewett,et al. Molecular Systems Biology Peer Review Process File in Vitro Integration of Ribosomal Rna Synthesis, Ribosome Assembly, and Translation Transaction Report , 2022 .
[53] Junjie Zhang,et al. Characterization of the Interactions within the mazEF Addiction Module of Escherichia coli* , 2003, Journal of Biological Chemistry.
[54] Pasquale Stano,et al. The Minimal Size of Liposome‐Based Model Cells Brings about a Remarkably Enhanced Entrapment and Protein Synthesis , 2009, Chembiochem : a European journal of chemical biology.
[55] A. Spirin,et al. A continuous cell-free translation system capable of producing polypeptides in high yield. , 1988, Science.
[56] Michele Forlin,et al. Fluorescent proteins and in vitro genetic organization for cell-free synthetic biology. , 2013, ACS synthetic biology.
[57] Andrew D Griffiths,et al. A completely in vitro ultrahigh-throughput droplet-based microfluidic screening system for protein engineering and directed evolution. , 2012, Lab on a chip.
[58] C. Gross,et al. The heat shock response of E. coli is regulated by changes in the concentration of sigma 32. , 1987, Nature.
[59] Richard M. Murray,et al. Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems , 2014, ACS synthetic biology.
[60] H. Bremer. Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate , 1999 .
[61] Henrike Niederholtmeyer,et al. Rapid cell-free forward engineering of novel genetic ring oscillators , 2015, eLife.
[62] Steven M. Block,et al. Applied Force Reveals Mechanistic and Energetic Details of Transcription Termination , 2008, Cell.
[63] V. Braun,et al. Transcription of the region encoding the ferric dicitrate-transport system in Escherichia coli: similarity between promoters for fecA and for extracytoplasmic function sigma factors. , 1995, Gene.
[64] T Friedmann,et al. The nucleotide sequence of bacteriophage phiX174. , 1978, Journal of molecular biology.
[65] John L Markley,et al. Cell-free protein production and labeling protocol for NMR-based structural proteomics , 2004, Nature Methods.
[66] Carol A. Gross,et al. The heat shock response of E. coli is regulated by changes in the concentration of σ32 , 1987, Nature.
[67] Vincent Noireaux,et al. Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system. , 2014, Biochimie.
[68] Christopher A. Voigt,et al. A ' resource allocator ' for transcription based on a highly fragmented T 7 RNA polymerase Citation , 2014 .
[69] M. Chamberlin,et al. Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro. , 1981, The Journal of biological chemistry.
[70] Richard M. Murray,et al. Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology , 2013, Journal of visualized experiments : JoVE.
[71] B. Magasanik,et al. Expression of glnA in Escherichia coli is regulated at tandem promoters. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[72] Wei Chan,et al. Escherichia coli‐based cell free production of flagellin and ordered flagellin display on virus‐like particles , 2013, Biotechnology and bioengineering.
[73] V. Noireaux,et al. Cell-free expression with the toxic amino acid canavanine. , 2015, Bioorganic & medicinal chemistry letters.
[74] James J. Collins,et al. Paper-Based Synthetic Gene Networks , 2014, Cell.
[75] A. Minton,et al. How can biochemical reactions within cells differ from those in test tubes? , 2006, Journal of Cell Science.
[76] T. Kigawa,et al. A continuous cell-free protein synthesis system for coupled transcription-translation. , 1991, Journal of biochemistry.
[77] Wilson W Wong,et al. Single-cell zeroth-order protein degradation enhances the robustness of synthetic oscillator , 2007, Molecular systems biology.
[78] M. Chamberlin,et al. Secondary sigma factor controls transcription of flagellar and chemotaxis genes in Escherichia coli. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[79] Vincent Noireaux,et al. Toward an artificial cell based on gene expression in vesicles , 2005, Physical biology.
[80] V. Weiss,et al. Mechanism of activation of a response regulator: interaction of NtrC-P dimers induces ATPase activity , 1995, Journal of bacteriology.
[81] Hsiao-Ying Cheng,et al. Scalable plasmid transfer using engineered P1-based phagemids. , 2012, ACS synthetic biology.
[82] C. Georgopoulos,et al. Sequence analysis and regulation of the htrA gene of Escherichia coli: a sigma 32-independent mechanism of heat-inducible transcription. , 1988, Nucleic acids research.
[83] S. Busby,et al. Organisation of the regulatory region of the Escherichia coli melibiose operon. , 1987, Gene.
[84] D. Belin,et al. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter , 1995, Journal of bacteriology.
[85] Slawomir Filipek,et al. Co-translational association of cell-free expressed membrane proteins with supplied lipid bilayers , 2013, Molecular membrane biology.
[86] David K. Karig,et al. Expression optimization and synthetic gene networks in cell-free systems , 2011, Nucleic acids research.
[87] Volker Dötsch,et al. Cell-free expression and assembly of ATP synthase. , 2011, Journal of molecular biology.
[88] J. Swartz,et al. Cell‐free synthesis of functional aquaporin Z in synthetic liposomes , 2009, Biotechnology and bioengineering.
[89] P. Dehaseth,et al. Sigma 32-Dependent Promoter Activity In Vivo: Sequence Determinants of the groE Promoter , 2003, Journal of bacteriology.
[90] V. Noireaux,et al. An E. coli cell-free expression toolbox: application to synthetic gene circuits and artificial cells. , 2012, ACS synthetic biology.
[91] R. Murray,et al. Gene circuit performance characterization and resource usage in a cell-free "breadboard". , 2014, ACS synthetic biology.
[92] P. Dennis,et al. Cytoplasmic RNA Polymerase inEscherichia coli , 2001, Journal of bacteriology.
[93] S. Zimmerman,et al. Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli. , 1991, Journal of molecular biology.
[94] Thomas E. Landrain,et al. De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells , 2012, Proceedings of the National Academy of Sciences.
[95] Vincent Noireaux,et al. Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system. , 2014, ACS synthetic biology.
[96] M. Elowitz,et al. Protein Mobility in the Cytoplasm ofEscherichia coli , 1999, Journal of bacteriology.
[97] Vincent Noireaux,et al. Integration of biological parts toward the synthesis of a minimal cell. , 2014, Current opinion in chemical biology.
[98] Yutetsu Kuruma,et al. In vitro synthesis of the E. coli Sec translocon from DNA. , 2014, Angewandte Chemie.
[99] A. Minton,et al. Macromolecular crowding: biochemical, biophysical, and physiological consequences. , 1993, Annual review of biophysics and biomolecular structure.
[100] Talmon Arad,et al. Cell-free co-synthesis of protein nanoassemblies: tubes, rings, and doughnuts. , 2007, Nano letters.
[101] R. Bar-Ziv,et al. Principles of cell-free genetic circuit assembly , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[102] Christopher T Walsh,et al. In vitro biosynthesis of violacein from L-tryptophan by the enzymes VioA-E from Chromobacterium violaceum. , 2006, Biochemistry.