A Series Registration Framework to Recover Resting-State Functional Magnetic Resonance Data Degraded By Motion.

Data retention is a significant problem in the medical imaging domain. For example, resting-state functional magnetic resonance images (rs-fMRIs) are invaluable for studying neurodevelopment but are highly susceptible to corruption due to patient motion. The effects of patient motion can be reduced through post-acquisition techniques such as volume registration. Traditional volume registration minimizes the global differences between all volumes in the rs-fMRI sequence and a designated reference volume. We suggest using the spatiotemporal relationships between subsequent image volumes to inform the registration: they are used initialize each volume registration to reduce local differences between volumes while minimizing global differences. We apply both the traditional and novel registration methods to a set of healthy human neonatal rs-fMRIs with significant motion artifacts (N=17). Both methods impacted the mean and standard deviation of the image sequences' correlation ratio matrices similarly; however, the novel framework was more effective in meeting gold standard motion thresholds.

[1]  R. Cameron Craddock,et al.  A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics , 2013, NeuroImage.

[2]  Alberto Llera,et al.  ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data , 2015, NeuroImage.

[3]  Stephen M. Smith,et al.  A global optimisation method for robust affine registration of brain images , 2001, Medical Image Anal..

[4]  Abraham Z. Snyder,et al.  Real-time motion analytics during brain MRI improve data quality and reduce costs , 2017, NeuroImage.

[5]  Richard C. Reynolds,et al.  An improved model of motion-related signal changes in fMRI , 2017, NeuroImage.

[6]  Maxim Zaitsev,et al.  Prospective motion correction in functional MRI , 2017, NeuroImage.

[7]  Melody Alexander,et al.  Managing patient stress in pediatric radiology. , 2012, Radiologic technology.

[8]  Abraham Z. Snyder,et al.  Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion , 2012, NeuroImage.

[9]  C. Coté,et al.  Guidelines for Monitoring and Management of Pediatric Patients Before, During, and After Sedation for Diagnostic and Therapeutic Procedures: Update 2016. , 2018, Pediatric dentistry.

[10]  Allan L. Reiss,et al.  High success rates of sedation-free brain MRI scanning in young children using simple subject preparation protocols with and without a commercial mock scanner–the Diabetes Research in Children Network (DirecNet) experience , 2014, Pediatric Radiology.

[11]  Mert R. Sabuncu,et al.  The influence of head motion on intrinsic functional connectivity MRI , 2012, NeuroImage.

[12]  Yong He,et al.  Altered baseline brain activity in children with ADHD revealed by resting-state functional MRI. , 2007, Brain & development.

[13]  Ludovica Griffanti,et al.  Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers , 2014, NeuroImage.

[14]  Oliver Speck,et al.  Magnetic resonance imaging of freely moving objects: prospective real-time motion correction using an external optical motion tracking system , 2006, NeuroImage.

[15]  Thomas T. Liu,et al.  A component based noise correction method (CompCor) for BOLD and perfusion based fMRI , 2007, NeuroImage.

[16]  Karl J. Friston,et al.  Movement‐Related effects in fMRI time‐series , 1996, Magnetic resonance in medicine.

[17]  Jeffrey J Neil,et al.  Use of resting-state functional MRI to study brain development and injury in neonates. , 2015, Seminars in perinatology.

[18]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[19]  Hang Joon Jo,et al.  Mapping sources of correlation in resting state FMRI, with artifact detection and removal , 2010, NeuroImage.

[20]  John Suckling,et al.  A wavelet method for modeling and despiking motion artifacts from resting-state fMRI time series , 2014, NeuroImage.

[21]  Vince D. Calhoun,et al.  Abnormal functional connectivity of default mode sub-networks in autism spectrum disorder patients , 2010, NeuroImage.

[22]  Eric J. Seibel,et al.  Use of Virtual Reality Distraction to Reduce Claustrophobia Symptoms during a Mock Magnetic Resonance Imaging Brain Scan: A Case Report , 2007, Cyberpsychology Behav. Soc. Netw..

[23]  Evan M. Gordon,et al.  Functional System and Areal Organization of a Highly Sampled Individual Human Brain , 2015, Neuron.

[24]  Nicholas Ayache,et al.  The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration , 1998, MICCAI.

[25]  Satrajit S. Ghosh,et al.  Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python , 2011, Front. Neuroinform..

[26]  Shi-Joon Yoo,et al.  The Feed and Sleep method: how to perform a cardiac MRI in the 1st year of life without the need for General Anesthesia , 2011, Journal of Cardiovascular Magnetic Resonance.

[27]  Mark A. Elliott,et al.  Impact of in-scanner head motion on multiple measures of functional connectivity: Relevance for studies of neurodevelopment in youth , 2012, NeuroImage.

[28]  P. Ellen Grant,et al.  Temporal Registration in In-Utero Volumetric MRI Time Series , 2016, MICCAI.

[29]  J. Gee,et al.  The Insight ToolKit image registration framework , 2014, Front. Neuroinform..

[30]  Martin J. McKeown,et al.  An information-theoretic criterion for intrasubject alignment of FMRI time series: motion corrected independent component analysis , 2005, IEEE Transactions on Medical Imaging.

[31]  J. Strain,et al.  MRI-compatible audio/visual system: impact on pediatric sedation , 2001, Pediatric Radiology.

[32]  Timothy O. Laumann,et al.  Methods to detect, characterize, and remove motion artifact in resting state fMRI , 2014, NeuroImage.

[33]  K. Chappell,et al.  Avoiding sedation in research MRI and spectroscopy in infants: our approach, success rate and prevalence of incidental findings , 2012, Archives of Disease in Childhood: Fetal and Neonatal Edition.

[34]  Ben D. Fulcher,et al.  An evaluation of the efficacy, reliability, and sensitivity of motion correction strategies for resting-state functional MRI , 2017, NeuroImage.