Structure-based de novo prediction of zinc-binding sites in proteins of unknown function
暂无分享,去创建一个
Haiyan Liu | Wei Zhao | Bo Ding | Meng Xu | Zhi Liang | Maikun Teng | Liwen Niu | Haiyan Liu | Zhi Liang | M. Teng | L. Niu | Wei Zhao | Bo Ding | Meng Xu
[1] Chin-Teng Lin,et al. Protein Metal Binding Residue Prediction Based on Neural Networks , 2004, ICONIP.
[2] B. Rost,et al. Identifying cysteines and histidines in transition‐metal‐binding sites using support vector machines and neural networks , 2006, Proteins.
[3] Shekhar C Mande,et al. Exploiting 3D structural templates for detection of metal‐binding sites in protein structures , 2008, Proteins.
[4] V. Sobolev,et al. Prediction of transition metal‐binding sites from apo protein structures , 2007, Proteins.
[5] Edward I. Solomon,et al. Structural and Functional Aspects of Metal Sites in Biology. , 1996, Chemical reviews.
[6] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[7] J. S. Sodhi,et al. Predicting metal-binding site residues in low-resolution structural models. , 2004, Journal of molecular biology.
[8] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.
[9] Paolo Frasconi,et al. Merit Award Winners , 2004, BMC Bioinformatics.
[10] Burkhard Rost,et al. MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence , 2008, Bioinform..
[11] R. Janowski,et al. Bacterioferritin from Mycobacterium smegmatis contains zinc in its di‐nuclear site , 2008, Protein science : a publication of the Protein Society.
[12] Andrew J. Bordner,et al. Predicting small ligand binding sites in proteins using backbone structure , 2008, Bioinform..
[13] K. Fukui,et al. Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 Å resolution , 2007, Proteins.
[14] F. Gomis-Rüth,et al. Structural aspects of the metzincin clan of metalloendopeptidases , 2003, Molecular biotechnology.
[15] Joel P Mackay,et al. Designed metal-binding sites in biomolecular and bioinorganic interactions. , 2008, Current opinion in structural biology.
[16] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[17] Antonio Rosato,et al. A hint to search for metalloproteins in gene banks , 2004, Bioinform..
[18] L. Serrano,et al. Prediction of water and metal binding sites and their affinities by using the Fold-X force field. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[19] Lianyi Han,et al. Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach , 2006, BMC Bioinformatics.
[20] Antonio Rosato,et al. Metalloproteomes: a bioinformatic approach. , 2009, Accounts of chemical research.
[21] Jessica C. Ebert,et al. Robust recognition of zinc binding sites in proteins , 2007, Protein science : a publication of the Protein Society.
[22] Nanjiang Shu,et al. BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm618 Sequence analysis Prediction of zinc-binding sites in proteins from sequence , 2008 .
[23] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[24] Toshiyuki Yamamoto,et al. CONFLICT OF INTEREST: None declared. , 2013 .
[25] A. Rosato,et al. The annotation of full zinc proteomes , 2010, JBIC Journal of Biological Inorganic Chemistry.
[26] Antonio Rosato,et al. Counting the zinc-proteins encoded in the human genome. , 2006, Journal of proteome research.
[27] Ronen Levy,et al. Prediction of 3D metal binding sites from translated gene sequences based on remote‐homology templates , 2009, Proteins.