Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum
暂无分享,去创建一个
Lazaros G. Papageorgiou | Christopher J. Rawlings | Sophia Tsoka | Artem Lysenko | Kim E. Hammond-Kosack | Martin Urban | Mansoor Saqi | Laura Bennett | C. Rawlings | L. Papageorgiou | M. Saqi | S. Tsoka | K. Hammond-Kosack | M. Urbán | Laura Bennett | A. Lysenko
[1] Andrea Lancichinetti,et al. Detecting the overlapping and hierarchical community structure in complex networks , 2008, 0802.1218.
[2] Guimei Liu,et al. Complex discovery from weighted PPI networks , 2009, Bioinform..
[3] Shailesh V. Date,et al. A Probabilistic Functional Network of Yeast Genes , 2004, Science.
[4] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[5] L. Jiao,et al. Adjusting from disjoint to overlapping community detection of complex networks , 2009 .
[6] Christopher J. Rawlings,et al. Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis , 2011, BMC Bioinformatics.
[7] Marcel Salathé,et al. Dynamics and Control of Diseases in Networks with Community Structure , 2010, PLoS Comput. Biol..
[8] Christopher J. Rawlings,et al. PHI-base update: additions to the pathogen–host interaction database , 2007, Nucleic Acids Res..
[9] P. Bork,et al. Proteome Organization in a Genome-Reduced Bacterium , 2009, Science.
[10] Weixiong Zhang,et al. Identifying network communities with a high resolution. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[11] Alain Guénoche,et al. Multifunctional proteins revealed by overlapping clustering in protein interaction network , 2011, Bioinform..
[12] R. Guimerà,et al. Functional cartography of complex metabolic networks , 2005, Nature.
[13] Lazaros G. Papageorgiou,et al. Finding community structures in complex networks using mixed integer optimisation , 2007 .
[14] Shihua Zhang,et al. Identification of overlapping community structure in complex networks using fuzzy c-means clustering , 2007 .
[15] Keiko Yoshioka,et al. NPS6, Encoding a Nonribosomal Peptide Synthetase Involved in Siderophore-Mediated Iron Metabolism, Is a Conserved Virulence Determinant of Plant Pathogenic Ascomycetes[W] , 2006, The Plant Cell Online.
[16] K. A. Samani,et al. Detecting overlapping community structure of networks based on vertex–vertex correlations , 2009 .
[17] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[18] Lazaros G. Papageorgiou,et al. Detection of Disjoint and Overlapping Modules in Weighted Complex Networks , 2012, Adv. Complex Syst..
[19] M E J Newman,et al. Finding and evaluating community structure in networks. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[20] Lazaros G. Papageorgiou,et al. Module detection in complex networks using integer optimisation , 2010, Algorithms for Molecular Biology.
[21] M E J Newman,et al. Community structure in social and biological networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[22] Jingchun Chen,et al. Detecting functional modules in the yeast protein-protein interaction network , 2006, Bioinform..
[23] Young-Su Seo,et al. A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum , 2011, PLoS pathogens.
[24] Xiaoke Ma,et al. Eigenspaces of networks reveal the overlapping and hierarchical community structure more precisely , 2010 .
[25] Kengo Kinoshita,et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis , 2006, Nucleic Acids Res..
[26] Xing-Ming Zhao,et al. FPPI: Fusarium graminearum protein-protein interaction database. , 2009, Journal of proteome research.
[27] Jean-Loup Guillaume,et al. Fast unfolding of communities in large networks , 2008, 0803.0476.
[28] Insuk Lee,et al. Integrating functional genomics data. , 2008, Methods in molecular biology.
[29] Christopher J. Rawlings,et al. PHI-base: a new database for pathogen host interactions , 2005, Nucleic Acids Res..
[30] T. Vicsek,et al. Uncovering the overlapping community structure of complex networks in nature and society , 2005, Nature.
[31] Christina A. Cuomo,et al. The Fusarium graminearum Genome Reveals a Link Between Localized Polymorphism and Pathogen Specialization , 2007, Science.
[32] Shihua Zhang,et al. Uncovering fuzzy community structure in complex networks. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[33] Christopher J. Rawlings,et al. Graph-based analysis and visualization of experimental results with ONDEX , 2006, Bioinform..