Comparison of maize ( Zea mays L. ) F 2 -hybrid and parental inbred line primary root transcriptomes suggests organ specific patterns of non-additive gene expression and conserved expression trends between different hybrids in a subset of genes

[1]  F. Hochholdinger,et al.  Towards the molecular basis of heterosis. , 2007, Trends in plant science.

[2]  H. Pospisil,et al.  Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern , 2007, Plant Molecular Biology.

[3]  H. Piepho,et al.  Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height , 2006, Plant Molecular Biology.

[4]  J. Birchler,et al.  Unraveling the genetic basis of hybrid vigor , 2006, Proceedings of the National Academy of Sciences.

[5]  Daoxiu Zhou,et al.  Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs , 2006, Plant Molecular Biology.

[6]  Nathan M. Springer,et al.  Cis-transcriptional Variation in Maize Inbred Lines B73 and Mo17 Leads to Additive Expression Patterns in the F1 Hybrid , 2006, Genetics.

[7]  O. Crasta,et al.  Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis , 2006, Theoretical and Applied Genetics.

[8]  Dan Nettleton,et al.  All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[9]  Hans-Peter Piepho,et al.  Combining signals from spotted cDNA microarrays obtained at different scanning intensities , 2006, Bioinform..

[10]  H. Piepho,et al.  Manifestation of heterosis during early maize (Zea mays L.) root development , 2006, Theoretical and Applied Genetics.

[11]  Martin Kuiper,et al.  Genetic Analysis of Variation in Gene Expression in Arabidopsis thaliana , 2005, Genetics.

[12]  J. G. Scandalios.  Oxidative stress: molecular perception and transduction of signals triggering antioxidant gene defenses. , 2005, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.

[13]  Joachim Messing,et al.  Gene movement by Helitron transposons contributes to the haplotype variability of maize. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[14]  Andy Pereira,et al.  Faculty Opinions recommendation of Evolution of DNA sequence nonhomologies among maize inbreds. , 2005 .

[15]  J. Birchler,et al.  Nonadditive Gene Expression in Diploid and Triploid Hybrids of Maize , 2005, Genetics.

[16]  James A. Birchler,et al.  In Search of the Molecular Basis of Heterosis , 2003, The Plant Cell Online.

[17]  Zihua Hu,et al.  Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. , 2003, The Plant journal : for cell and molecular biology.

[18]  Joachim Messing,et al.  Gene expression of a gene family in maize based on noncollinear haplotypes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[19]  Patrick S Schnable,et al.  Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize. , 2003, The Plant cell.

[20]  I. N. Saab,et al.  Expression Profiling of Reciprocal Maize Hybrids Divergent for Cold Germination and Desiccation Tolerance , 2002, Plant Physiology.

[21]  F. Speleman,et al.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes , 2002, Genome Biology.

[22]  H. Fu,et al.  Intraspecific violation of genetic colinearity and its implications in maize , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[23]  The Arabidopsis Genome Initiative.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[24]  Charles Darwin,et al.  The Effects of Cross and Self Fertilisation in the Vegetable Kingdom , 1972 .

[25]  H. Grüneberg,et al.  Introduction to quantitative genetics , 1960 .

[26]  L. Powers.  An Expansion of Jones's Theory for the Explanation of Heterosis , 1944, The American Naturalist.

[27]  D. F. Jones,et al.  Dominance of Linked Factors as a Means of Accounting for Heterosis. , 1917, Proceedings of the National Academy of Sciences of the United States of America.

[28]  A. Bruce.  THE MENDELIAN THEORY OF HEREDITY AND THE AUGMENTATION OF VIGOR. , 1910, Science.

[29]  F. Keeble,et al.  The mode of inheritance of stature and of time of flowering in peas (Pisum sativum) , 1910, Journal of Genetics.

[30]  C. Davenport.  DEGENERATION, ALBINISM AND INBREEDING. , 1908, Science.

[31]  P. Schnable,et al.  Isolation, Characterization, and Pericycle-Specific Transcriptome Analyses of the Novel Maize Lateral and Seminal Root Initiation Mutant rum1 1[w] , 2005 .

[32]  A. Oliphant,et al.  A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). , 2002, Science.

[33]  Roland Arnold,et al.  MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome , 2002, Nucleic Acids Res..

[34]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[35]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[36]  J. G. Scandalios,et al.  Cloning of cDNA for maize superoxide dismutase 2 (SOD2). , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[37]  J. Gowen,et al.  Beginnings of the heterosis concept. , 1952 .

[38]  G. Shull.  The composition of a field of maize , 1908 .