Assembling the Marine Metagenome, One Cell at a Time
暂无分享,去创建一个
J. Eisen | S. Chatterji | R. Stepanauskas | Cliff Han | T. Woyke | M. Sieracki | A. Copeland | Jan-Fang Cheng | Pavel Senin | G. Xie | Jimmy H. W. Saw | José M. González | H. Kiss | Chi-yen Yang | Sourav Chatterji
[1] Itai Sharon,et al. Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems , 2010, The ISME Journal.
[2] Heng Tao Shen,et al. Principal Component Analysis , 2009, Encyclopedia of Biometrics.
[3] I. Paulsen,et al. Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria) , 2008, Proceedings of the National Academy of Sciences.
[4] E. Delong,et al. The Microbial Engines That Drive Earth's Biogeochemical Cycles , 2008, Science.
[5] Itai Sharon,et al. Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems , 2008, The ISME Journal.
[6] Photochemical production of molecular hydrogen in lake water and coastal seawater , 2008 .
[7] Zhaojun Bai,et al. CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads , 2007, RECOMB.
[8] R. Knight,et al. The Human Microbiome Project , 2007, Nature.
[9] M. Moran,et al. Resourceful heterotrophs make the most of light in the coastal ocean , 2007, Nature Reviews Microbiology.
[10] Timothy B. Stockwell,et al. Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells , 2007, PLoS genetics.
[11] S. Giovannoni,et al. Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site , 2007, The ISME Journal.
[12] S. Quake,et al. Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth , 2007, Proceedings of the National Academy of Sciences.
[13] R. Stepanauskas,et al. Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time , 2007, Proceedings of the National Academy of Sciences.
[14] Roger S Lasken,et al. Mechanism of chimera formation during the Multiple Displacement Amplification reaction , 2007 .
[15] A. Halpern,et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.
[16] Alexander F. Auch,et al. MEGAN analysis of metagenomic data. , 2007, Genome research.
[17] S. Giovannoni,et al. The SAR92 Clade: an Abundant Coastal Clade of Culturable Marine Bacteria Possessing Proteorhodopsin , 2007, Applied and Environmental Microbiology.
[18] R. Neutze,et al. Light stimulates growth of proteorhodopsin-containing marine Flavobacteria , 2007, Nature.
[19] P. Vandamme,et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. , 2007, International journal of systematic and evolutionary microbiology.
[20] E. Delong,et al. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum , 2006, Proceedings of the National Academy of Sciences.
[21] Natalia N. Ivanova,et al. Symbiosis insights through metagenomic analysis of a microbial consortium. , 2006, Nature Reviews Microbiology.
[22] G. Church,et al. Sequencing genomes from single cells by polymerase cloning , 2006, Nature Biotechnology.
[23] Lynne A. Goodwin,et al. Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis , 2006, Journal of bacteriology.
[24] Inna Dubchak,et al. The integrated microbial genomes (IMG) system , 2005, Nucleic Acids Res..
[25] Patricia Siguier,et al. ISfinder: the reference centre for bacterial insertion sequences , 2005, Nucleic Acids Res..
[26] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[27] M. Noordewier,et al. Genome Streamlining in a Cosmopolitan Oceanic Bacterium , 2005, Science.
[28] Søren Brunak,et al. Prediction of twin-arginine signal peptides , 2005, BMC Bioinformatics.
[29] A. C. Munk,et al. Closing bacterial genomic sequence gaps with adaptor-PCR. , 2005, BioTechniques.
[30] Martin Ester,et al. Sequence analysis PSORTb v . 2 . 0 : Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis , 2004 .
[31] S. Tringe,et al. Comparative Metagenomics of Microbial Communities , 2004, Science.
[32] Peter D. Karp,et al. MetaCyc: a multiorganism database of metabolic pathways and enzymes , 2005, Nucleic Acids Res..
[33] M. Moran,et al. Use of Microautoradiography Combined with Fluorescence In Situ Hybridization To Determine Dimethylsulfoniopropionate Incorporation by Marine Bacterioplankton Taxa , 2004, Applied and Environmental Microbiology.
[34] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[35] O. White,et al. Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.
[36] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[37] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[38] Burkhard Haefner,et al. Drugs from the deep: marine natural products as drug candidates. , 2003, Drug discovery today.
[39] K. Zengler,et al. Cultivating the uncultured , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[40] S. Giovannoni,et al. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade , 2002, Nature.
[41] Sean R. Eddy,et al. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure , 2002, BMC Bioinformatics.
[42] S. Salzberg,et al. Fast algorithms for large-scale genome alignment and comparison. , 2002, Nucleic acids research.
[43] D. Kirchman. The ecology of Cytophaga-Flavobacteria in aquatic environments. , 2002, FEMS microbiology ecology.
[44] J. Hoheisel,et al. Global Analysis of the General Stress Response ofBacillus subtilis , 2001, Journal of bacteriology.
[45] Marion Leclerc,et al. Proteorhodopsin phototrophy in the ocean , 2001, Nature.
[46] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[47] Lu Zhang,et al. Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. , 2000, Plant physiology.
[48] S. Salzberg,et al. Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.
[49] G. Olsen,et al. CRITICA: coding region identification tool invoking comparative analysis. , 1999, Molecular biology and evolution.
[50] L. Proctor,et al. Molecular evidence for zooplankton-associated nitrogen-fixing anaerobes based on amplification of the nifH gene , 1999 .
[51] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[52] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.
[53] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[54] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[55] D. Lane. 16S/23S rRNA sequencing , 1991 .
[56] E. Stackebrandt,et al. Nucleic acid techniques in bacterial systematics , 1991 .
[57] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[58] N. Pace,et al. The Analysis of Natural Microbial Populations by Ribosomal RNA Sequences , 1986 .