Inhibition of Rab1B Impairs Trafficking and Maturation of SARS-CoV-2 Spike Protein

Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) utilizes cellular trafficking pathways to process its structural proteins and move them to the site of assembly. Nevertheless, the exact process of assembly and subcellular trafficking of SARS-CoV-2 proteins remains largely unknown. Here, we have identified and characterized Rab1B as an important host factor for the trafficking and maturation of the spike protein (S) after synthesis at the endoplasmic reticulum (ER). Using confocal microscopy, we showed that S and Rab1B substantially colocalized in compartments of the early secretory pathway. Co-expression of dominant-negative (DN) Rab1B N121I leads to an aberrant distribution of S into perinuclear spots after ectopic expression and in SARS-CoV-2-infected cells caused by either structural rearrangement of the ERGIC or Golgi or missing interaction between Rab1B and S. Western blot analyses revealed a complete loss of the mature, cleaved S2 subunit in cell lysates and culture supernatants upon co-expression of DN Rab1B N121I. In sum, our studies indicate that Rab1B is an important regulator of trafficking and maturation of SARS-CoV-2 S, which not only improves our understanding of the coronavirus replication cycle but also may have implications for the development of antiviral strategies.

[1]  B. La Scola,et al.  Choosing a cellular model to study SARS-CoV-2 , 2022, Frontiers in Cellular and Infection Microbiology.

[2]  B. Payne,et al.  Phase 2/3 Trial of Molnupiravir for Treatment of Covid-19 in Nonhospitalized Adults. , 2021, NEJM evidence.

[3]  E. Go,et al.  Analysis of Glycosylation and Disulfide Bonding of Wild-Type SARS-CoV-2 Spike Glycoprotein , 2021, Journal of virology.

[4]  Elisabeth Mahase Covid-19: Pfizer’s paxlovid is 89% effective in patients at risk of serious illness, company reports , 2021, BMJ.

[5]  P. Pang,et al.  Early Treatment for Covid-19 with SARS-CoV-2 Neutralizing Antibody Sotrovimab. , 2021, The New England journal of medicine.

[6]  John D. Davis,et al.  REGEN-COV Antibody Combination and Outcomes in Outpatients with Covid-19 , 2021, The New England journal of medicine.

[7]  S. Munro,et al.  Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formation , 2021, Nature Communications.

[8]  Philip L. Tzou,et al.  SARS-CoV-2 Antiviral Therapy , 2021, Clinical microbiology reviews.

[9]  Y. Orba,et al.  TMPRSS11D and TMPRSS13 Activate the SARS-CoV-2 Spike Protein , 2021, Viruses.

[10]  D. Lavillette,et al.  The SARS-CoV-2 envelope and membrane proteins modulate maturation and retention of the spike protein, allowing assembly of virus-like particles , 2020, Journal of Biological Chemistry.

[11]  D. A. Stein,et al.  TMPRSS2 and furin are both essential for proteolytic activation of SARS-CoV-2 in human airway cells , 2020, Life Science Alliance.

[12]  G. Voeltz,et al.  Vesicular and uncoated Rab1-dependent cargo carriers facilitate ER to Golgi transport , 2020, Journal of Cell Science.

[13]  Daniel Wrapp,et al.  Site-specific glycan analysis of the SARS-CoV-2 spike , 2020, Science.

[14]  M. Hoffmann,et al.  A Multibasic Cleavage Site in the Spike Protein of SARS-CoV-2 Is Essential for Infection of Human Lung Cells , 2020, Molecular Cell.

[15]  Yan Liu,et al.  Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV , 2020, Nature Communications.

[16]  G. Herrler,et al.  SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor , 2020, Cell.

[17]  D. Stephens,et al.  COPII-dependent ER export in animal cells: adaptation and control for diverse cargo , 2018, Histochemistry and Cell Biology.

[18]  Chengbao Wang,et al.  Rab1A is required for assembly of classical swine fever virus particle. , 2018, Virology.

[19]  C. Alvarez,et al.  Spatial-Temporal Study of Rab1b Dynamics and Function at the ER-Golgi Interface , 2016, PloS one.

[20]  J. Simpson,et al.  High-content analysis of Rab protein function at the ER-Golgi interface , 2015, Bioarchitecture.

[21]  I. Lindberg,et al.  Novel Furin Inhibitors with Potent Anti‐infectious Activity , 2015, ChemMedChem.

[22]  J. Simpson,et al.  A high-content screening microscopy approach to dissect the role of Rab proteins in Golgi-to-ER retrograde trafficking , 2015, Journal of Cell Science.

[23]  J. K. Roy,et al.  Rab proteins: the key regulators of intracellular vesicle transport. , 2014, Experimental cell research.

[24]  Roberto Sitia,et al.  A Dynamic Study of Protein Secretion and Aggregation in the Secretory Pathway , 2014, PloS one.

[25]  J. Yates,et al.  The Intracellular Cargo Receptor ERGIC-53 Is Required for the Production of Infectious Arenavirus, Coronavirus, and Filovirus Particles , 2013, Cell Host & Microbe.

[26]  Markus Aebi,et al.  N-linked protein glycosylation in the ER. , 2013, Biochimica et biophysica acta.

[27]  J. Goldberg,et al.  Rules for the recognition of dilysine retrieval motifs by coatomer , 2013, The EMBO journal.

[28]  E. Sklan,et al.  Human immunodeficiency virus type 1 envelope proteins traffic toward virion assembly sites via a TBC1D20/Rab1-regulated pathway , 2012, Retrovirology.

[29]  Yuko Morikawa,et al.  Apical Transport of Influenza A Virus Ribonucleoprotein Requires Rab11-positive Recycling Endosome , 2011, PloS one.

[30]  F. Barr,et al.  Analysis of Rab GTPase-Activating Proteins Indicates that Rab1a/b and Rab43 Are Important for Herpes Simplex Virus 1 Secondary Envelopment , 2011, Journal of Virology.

[31]  M. Amorim,et al.  A Rab11- and Microtubule-Dependent Mechanism for Cytoplasmic Transport of Influenza A Virus Viral RNA , 2011, Journal of Virology.

[32]  G. Neumann,et al.  Role of the GTPase Rab1b in Ebolavirus Particle Formation , 2010, Journal of Virology.

[33]  J. Glenn,et al.  TBC1D20 Is a Rab1 GTPase-activating Protein That Mediates Hepatitis C Virus Replication* , 2007, Journal of Biological Chemistry.

[34]  C. Preisinger,et al.  Analysis of GTPase-activating proteins: Rab1 and Rab43 are key Rabs required to maintain a functional Golgi complex in human cells , 2007, Journal of Cell Science.

[35]  Silke Stertz,et al.  The intracellular sites of early replication and budding of SARS-coronavirus , 2007, Virology.

[36]  J. Li,et al.  The Cytoplasmic Tail of the Severe Acute Respiratory Syndrome Coronavirus Spike Protein Contains a Novel Endoplasmic Reticulum Retrieval Signal That Binds COPI and Promotes Interaction with Membrane Protein , 2006, Journal of Virology.

[37]  B. Goud,et al.  Rab1 defines a novel pathway connecting the pre-Golgi intermediate compartment with the cell periphery. , 2006, Molecular biology of the cell.

[38]  K. Yuen,et al.  Differential maturation and subcellular localization of severe acute respiratory syndrome coronavirus surface proteins S, M and E. , 2005, The Journal of general virology.

[39]  L. Enjuanes,et al.  A Novel Sorting Signal for Intracellular Localization Is Present in the S Protein of a Porcine Coronavirus but Absent from Severe Acute Respiratory Syndrome-associated Coronavirus , 2004, Journal of Biological Chemistry.

[40]  C. Machamer,et al.  Intracellular Targeting Signals Contribute to Localization of Coronavirus Spike Proteins near the Virus Assembly Site , 2004, Journal of Virology.

[41]  E. Sztul,et al.  COPI recruitment is modulated by a Rab1b-dependent mechanism. , 2003, Molecular biology of the cell.

[42]  J. Lippincott-Schwartz,et al.  Maintenance of Golgi structure and function depends on the integrity of ER export , 2001, The Journal of cell biology.

[43]  W. Balch,et al.  Rab1 Interaction with a GM130 Effector Complex Regulates COPII Vesicle cis‐Golgi Tethering , 2001, Traffic.

[44]  A. Helenius,et al.  Intracellular functions of N-linked glycans. , 2001, Science.

[45]  H. Hauri,et al.  Mistargeting of the Lectin ERGIC-53 to the Endoplasmic Reticulum of HeLa Cells Impairs the Secretion of a Lysosomal Enzyme , 1998, The Journal of cell biology.

[46]  F. Tokunaga,et al.  In situ inhibition of vesicle transport and protein processing in the dominant negative Rab1 mutant of Drosophila. , 1997, Journal of cell science.

[47]  W. Balch,et al.  A GDP-bound of rab1 inhibits protein export from the endoplasmic reticulum and transport between Golgi compartments , 1994, The Journal of cell biology.

[48]  C. Der,et al.  GTP-binding mutants of rab1 and rab2 are potent inhibitors of vesicular transport from the endoplasmic reticulum to the Golgi complex , 1992, The Journal of cell biology.

[49]  H. Hauri,et al.  Identification, by a monoclonal antibody, of a 53-kD protein associated with a tubulo-vesicular compartment at the cis-side of the Golgi apparatus , 1988, The Journal of cell biology.

[50]  P. Novick,et al.  Role of Rab GTPases in membrane traffic and cell physiology. , 2011, Physiological reviews.