ON COMPOSITE LIKELIHOODS IN STATISTICAL GENETICS
暂无分享,去创建一个
[1] J. Doob. Stochastic processes , 1953 .
[2] D. Thomas,et al. Statistical Methods in GeneticEpidemiology , 2014 .
[3] D. Hartl,et al. Population genetics of polymorphism and divergence. , 1992, Genetics.
[4] R. Nielsen,et al. Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium. , 2003, Theoretical population biology.
[5] A Collins,et al. Mapping a disease locus by allelic association. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[6] D. Balding,et al. Genealogical inference from microsatellite data. , 1998, Genetics.
[7] P. Fearnhead,et al. A coalescent-based method for detecting and estimating recombination from gene sequences. , 2002, Genetics.
[8] J. Terwilliger. A powerful likelihood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci. , 1995, American journal of human genetics.
[9] W. Stephan,et al. Joint effects of genetic hitchhiking and background selection on neutral variation. , 2000, Genetics.
[10] P. Donnelly,et al. The Fine-Scale Structure of Recombination Rate Variation in the Human Genome , 2004, Science.
[11] P. Donnelly,et al. A Fine-Scale Map of Recombination Rates and Hotspots Across the Human Genome , 2005, Science.
[12] R C Elston,et al. Introduction and overview , 2000, Statistical methods in medical research.
[13] S. Tavaré,et al. Ancestral Inference in Population Genetics , 1994 .
[14] C. Bustamante,et al. Distinguishing Between Selective Sweeps and Demography Using DNA Polymorphism Data , 2005, Genetics.
[15] P. Donnelly,et al. Inference in molecular population genetics , 2000 .
[16] R. Hudson. Two-locus sampling distributions and their application. , 2001, Genetics.
[17] Elizabeth A. Thompson,et al. Statistical inference from genetic data on pedigrees , 2003 .
[18] Bruce Rannala,et al. Methods for multipoint disease mapping using linkage disequilibrium , 2000, Genetic epidemiology.
[19] Peter Donnelly,et al. A common sequence motif associated with recombination hot spots and genome instability in humans , 2008, Nature Genetics.
[20] Likelihood-based disequilibrium mapping for two-marker haplotype data. , 2002, Theoretical population biology.
[21] Paul Fearnhead,et al. Bioinformatics Original Paper Sequenceldhot: Detecting Recombination Hotspots , 2022 .
[22] S.. Sampling theory for neutral alleles in a varying environment , 2003 .
[23] M. Nordborg,et al. Coalescent Theory , 2019, Handbook of Statistical Genomics.
[24] Jon A Yamato,et al. Maximum likelihood estimation of recombination rates from population data. , 2000, Genetics.
[25] C. Varin. On composite marginal likelihoods , 2008 .
[26] C. Varin,et al. A note on composite likelihood inference and model selection , 2005 .
[27] R. Griffiths,et al. An ancestral recombination graph , 1997 .
[28] N. Reid,et al. AN OVERVIEW OF COMPOSITE LIKELIHOOD METHODS , 2011 .
[29] Ofer Zeitouni,et al. Lectures on probability theory and statistics , 2004 .
[30] Dana C Crawford,et al. Evidence for substantial fine-scale variation in recombination rates across the human genome , 2004, Nature Genetics.
[31] L. Lazzeroni,et al. A chronology of fine-scale gene mapping by linkage disequilibrium , 2001, Statistical methods in medical research.
[32] N. Freimer,et al. Linkage-disequilibrium mapping of disease genes by reconstruction of ancestral haplotypes in founder populations. , 1999, American journal of human genetics.
[33] P. Donnelly,et al. Approximate likelihood methods for estimating local recombination rates , 2002 .
[34] David Posada,et al. Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. , 2006, Molecular biology and evolution.
[35] N. Schork,et al. Gene mapping via the ancestral recombination graph. , 2002, Theoretical population biology.
[36] S. Lessard,et al. Statistical Applications in Genetics and Molecular Biology A Composite-Conditional-Likelihood Approach for Gene Mapping Based on Linkage Disequilibrium in Windows of Marker Loci , 2011 .
[37] M. Xiong,et al. Fine-scale genetic mapping based on linkage disequilibrium: theory and applications. , 1997, American journal of human genetics.
[38] P. Marjoram,et al. Ancestral Inference from Samples of DNA Sequences with Recombination , 1996, J. Comput. Biol..
[39] Joseph K. Pickrell,et al. Signals of recent positive selection in a worldwide sample of human populations. , 2009, Genome research.
[40] P. Fearnhead,et al. A Comparison of Three Estimators of the Population-Scaled Recombination Rate: Accuracy and Robustness , 2005, Genetics.
[41] P. Fearnhead,et al. A novel method with improved power to detect recombination hotspots from polymorphism data reveals multiple hotspots in human genes. , 2005, American journal of human genetics.
[42] A. Auton,et al. Recombination rate estimation in the presence of hotspots. , 2007, Genome research.
[43] R. Nielsen,et al. Linkage Disequilibrium as a Signature of Selective Sweeps , 2004, Genetics.
[44] Simon Tavaré,et al. Linkage disequilibrium: what history has to tell us. , 2002, Trends in genetics : TIG.
[45] C.. Simulating Probability Distributions in the Coalescent * , 2022 .
[46] C. Bustamante,et al. A Composite-Likelihood Approach for Detecting Directional Selection From DNA Sequence Data , 2005, Genetics.
[47] C. J-F,et al. THE COALESCENT , 1980 .
[48] P. Donnelly,et al. Comparison of Fine-Scale Recombination Rates in Humans and Chimpanzees , 2005, Science.
[49] P. Donnelly,et al. Estimating recombination rates from population genetic data. , 2001, Genetics.
[50] R. Ziegler,et al. Introduction and Overview , 2004, Complementary Medicine Research.
[51] K. Roeder,et al. Disequilibrium mapping: composite likelihood for pairwise disequilibrium. , 1996, Genomics.
[52] D J Balding,et al. Bayesian fine-scale mapping of disease loci, by hidden Markov models. , 2000, American journal of human genetics.
[53] Jon A Yamato,et al. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. , 1995, Genetics.
[54] M. Slatkin,et al. Estimating allele age. , 2003, Annual review of genomics and human genetics.
[55] P. Fearnhead,et al. Postprocessing of Genealogical Trees , 2007, Genetics.
[56] M. Stephens,et al. Inference Under the Coalescent , 2004 .
[57] A. Boyko,et al. Linkage Disequilibrium and Demographic History of Wild and Domestic Canids , 2009, Genetics.
[58] Vincent Plagnol,et al. Possible Ancestral Structure in Human Populations , 2006, PLoS genetics.
[59] Na Li. The promise of composite likelihood methods for addressing computationally intensive challenges. , 2008, Advances in genetics.
[60] Paul Fearnhead,et al. Consistency of estimators of the population-scaled recombination rate. , 2003, Theoretical population biology.
[61] Carsten Wiuf,et al. Gene Genealogies, Variation and Evolution - A Primer in Coalescent Theory , 2004 .
[62] C. Wiuf. Consistency of estimators of population scaled parameters using composite likelihood , 2006, Journal of mathematical biology.
[63] M. McPeek,et al. Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping. , 1999, American journal of human genetics.
[64] C. Sabatti,et al. Bayesian analysis of haplotypes for linkage disequilibrium mapping. , 2001, Genome research.
[65] Jon A Yamato,et al. Maximum likelihood estimation of population growth rates based on the coalescent. , 1998, Genetics.
[66] Carlo Gaetan,et al. Composite likelihood methods for space-time data , 2006 .
[67] D. Cox,et al. A note on pseudolikelihood constructed from marginal densities , 2004 .
[68] J. Wakeley. Coalescent Theory: An Introduction , 2008 .
[69] D. Hartl,et al. Identification of a Locus Under Complex Positive Selection in Drosophila simulans by Haplotype Mapping and Composite-Likelihood Estimation , 2004, Genetics.
[70] P. Donnelly,et al. A new statistical method for haplotype reconstruction from population data. , 2001, American journal of human genetics.