Adapting concepts from systems biology to develop systems exposure event networks for exposure science research

Systems exposure science has emerged from the traditional environmental exposure assessment framework and incorporates new concepts that link sources of human exposure to internal dose and metabolic processes. Because many human environmental studies are designed for retrospective exposure evaluations they often do not provide practical toxicological outcome parameters. Our goal was to examine concepts from systems biology research and adapt them to a network approach that maps forward to a perturbation event using two hypothetical examples. The article proposes that environmental exposure studies should not only retrospectively document exposure levels, but also measure biological parameters that can be used to inform relevant systemic changes.

[1]  G. Jenkins,et al.  Genotoxic thresholds, DNA repair, and susceptibility in human populations. , 2010, Toxicology.

[2]  Robert F Herrick,et al.  Biomarker variance component estimation for exposure surrogate selection and toxicokinetic inference. , 2010, Toxicology letters.

[3]  Stephen W. Edwards,et al.  Biomarkers for Environmental Exposure , 2010 .

[4]  Tjalling Jager,et al.  Understanding toxicity as processes in time. , 2010, The Science of the total environment.

[5]  I. Rusyn,et al.  Computational Toxicology: Realizing the Promise of the Toxicity Testing in the 21st Century , 2010, Environmental health perspectives.

[6]  S. Rappaport,et al.  Enrichment of cysteinyl adducts of human serum albumin. , 2010, Analytical biochemistry.

[7]  L. Birnbaum Applying Research to Public Health Questions: Biologically Relevant Exposures , 2010, Environmental health perspectives.

[8]  J. Dorne,et al.  Metabolism, variability and risk assessment. , 2010, Toxicology.

[9]  Thomas A. Louis,et al.  What Role for Biologically Based Dose–Response Models in Estimating Low-Dose Risk? , 2010, Environmental health perspectives.

[10]  Q. Jöbsis,et al.  Increased cytokines, chemokines and soluble adhesion molecules in exhaled breath condensate of asthmatic children , 2009, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[11]  J. Pleil Influence of systems biology response and environmental exposure level on between-subject variability in breath and blood biomarkers , 2009, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[12]  Elaine A Cohen Hubal,et al.  Biologically relevant exposure science for 21st century toxicity testing. , 2009, Toxicological sciences : an official journal of the Society of Toxicology.

[13]  T. Imai,et al.  Chemokines as Novel Therapeutic Targets for Inflammatory Bowel Disease , 2009, Annals of the New York Academy of Sciences.

[14]  Antonio Colombi,et al.  Toward an "omic" physiopathology of reactive chemicals: thirty years of mass spectrometric study of the protein adducts with endogenous and xenobiotic compounds. , 2009, Mass spectrometry reviews.

[15]  J. Schellens,et al.  Protein versus DNA as a marker for peripheral blood mononuclear cell counting , 2009, Analytical and bioanalytical chemistry.

[16]  Stephen M. Rappaport,et al.  Building Exposure Biology Centers to Put the E into “G × E” Interaction Studies , 2009, Environmental health perspectives.

[17]  N. Dixit,et al.  Estimation of red blood cell lifespan from alveolar carbon monoxide measurements. , 2009, Translational research : the journal of laboratory and clinical medicine.

[18]  Elaine A. Cohen Hubal,et al.  Exposure as Part of a Systems Approach for Assessing Risk , 2009, Environmental health perspectives.

[19]  Stephen W. Edwards,et al.  Systems biology and mode of action based risk assessment. , 2008, Toxicological sciences : an official journal of the Society of Toxicology.

[20]  L. Needham Introduction to biomonitoring , 2008 .

[21]  Joachim D Pleil,et al.  Role of Exhaled Breath Biomarkers in Environmental Health Science , 2008, Journal of toxicology and environmental health. Part B, Critical reviews.

[22]  J. Stark Systems Biology: a noisy coming of age. , 2008, Current Opinion in Biotechnology.

[23]  B. van Ommen,et al.  Protein adduct formation by glucuronide metabolites of permethrin. , 2008, Chemical research in toxicology.

[24]  V. Kim,et al.  New concepts in the pathobiology of chronic obstructive pulmonary disease. , 2008, Proceedings of the American Thoracic Society.

[25]  Derek G Shendell,et al.  Potential health effects associated with residential proximity to freeways and primary roads: review of scientific literature, 1999-2006. , 2008, Journal of environmental health.

[26]  Beate Ritz,et al.  Ambient air pollution and adverse birth outcomes: methodologic issues in an emerging field. , 2008, Basic & clinical pharmacology & toxicology.

[27]  M. Lorber,et al.  Relative congener scaling of Polychlorinated dibenzo-p-dioxins and dibenzofurans to estimate building fire contributions in air, surface wipes, and dust samples. , 2007, Environmental science & technology.

[28]  N. Holland,et al.  Cytokines and other immunological biomarkers in children's environmental health studies. , 2007, Toxicology letters.

[29]  A. Barabasi,et al.  Human disease classification in the postgenomic era: A complex systems approach to human pathobiology , 2007, Molecular systems biology.

[30]  J. Angerer,et al.  Human biomonitoring: state of the art. , 2007, International journal of hygiene and environmental health.

[31]  W. Au Usefulness of biomarkers in population studies: from exposure to susceptibility and to prediction of cancer. , 2007, International journal of hygiene and environmental health.

[32]  S M Rappaport,et al.  Exposure reconstruction for reducing uncertainty in risk assessment: example using MTBE biomarkers and a simple pharmacokinetic model , 2007, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[33]  Jon R. Kettenring,et al.  The Practice of Cluster Analysis , 2006, J. Classif..

[34]  C. Wild Complementing the Genome with an “Exposome”: The Outstanding Challenge of Environmental Exposure Measurement in Molecular Epidemiology , 2005, Cancer Epidemiology Biomarkers & Prevention.

[35]  N. Siafakas,et al.  Th1/Th2 cytokine pattern in bronchoalveolar lavage fluid and induced sputum in pulmonary sarcoidosis , 2005, BMC Pulmonary Medicine.

[36]  Sean Ekins,et al.  Techniques: application of systems biology to absorption, distribution, metabolism, excretion and toxicity. , 2005, Trends in pharmacological sciences.

[37]  A. Barabasi,et al.  Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.

[38]  S. Salvi,et al.  Different airway inflammatory responses in asthmatic and healthy humans exposed to diesel , 2004, European Respiratory Journal.

[39]  D. Barr,et al.  Use of biomarkers to indicate exposure of children to organophosphate pesticides: implications for a longitudinal study of children's environmental health. , 2003, Environmental health perspectives.

[40]  Kelvin H Lee,et al.  Functional genomics and proteomics as a foundation for systems biology. , 2003, Briefings in functional genomics & proteomics.

[41]  L. Kobzik,et al.  Serial Review: Role of Reactive Oxygen and Nitrogen Species (ROS/RNS) in Lung Injury and Diseases Guest Editor: Brooke T. Mossman REACTIVE OXYGEN SPECIES IN PULMONARY INFLAMMATION BY AMBIENT PARTICULATES , 2003 .

[42]  R. Sirera,et al.  Quantification of proinflammatory cytokines in the urine of congestive heart failure patients. Its relationship with plasma levels , 2003, European journal of heart failure.

[43]  M. Törnqvist,et al.  Protein adducts: quantitative and qualitative aspects of their formation, analysis and applications. , 2002, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[44]  P. Stenvinkel,et al.  Review Articles: Inflammation in End‐stage Renal Disease: Sources, Consequences, and Therapy , 2002, Seminars in dialysis.

[45]  E. Domany Cluster Analysis of Gene Expression Data , 2002, physics/0206056.

[46]  Christopher J Portier,et al.  Toxicogenomics: the new frontier in risk analysis. , 2002, Carcinogenesis.

[47]  R. Shore,et al.  Albumin adducts of benzene oxide and 1,4-benzoquinone as measures of human benzene metabolism. , 2002, Cancer research.

[48]  S. Bonassi,et al.  Validation of biomarkers as early predictors of disease. , 2001, Mutation research.

[49]  R. Henderson,et al.  Using DNA and hemoglobin adducts to improve the risk assessment of butadiene. , 2001, Chemico-biological interactions.

[50]  Gregory Camilli,et al.  Application of a Method of Estimating DIF for Polytomous Test Items , 1999 .

[51]  R. W. Gracy,et al.  Reactive oxygen species: the unavoidable environmental insult? , 1999, Mutation research.

[52]  Judith D. Singer,et al.  Using SAS PROC MIXED to Fit Multilevel Models, Hierarchical Models, and Individual Growth Models , 1998 .

[53]  C. Montón,et al.  Lung inflammatory response in pneumonia. , 1998, Monaldi archives for chest disease = Archivio Monaldi per le malattie del torace.

[54]  F P Perera,et al.  Environment and cancer: who are susceptible? , 1997, Science.

[55]  R. Gupta,et al.  Detection of DNA-reactive metabolites in serum and their tissue distribution in mice exposed to multiple doses of carcinogen mixtures: role in human biomonitoring. , 1996, Carcinogenesis.

[56]  W. Bechtold,et al.  Protein adduct biomarkers: state of the art. , 1996, Environmental health perspectives.

[57]  P. Farmer Monitoring of human exposure to carcinogens through DNA and protein adduct determination. , 1995, Toxicology letters.

[58]  A. Mantovani,et al.  Chemokines , 1994, The Lancet.

[59]  S. Tannenbaum,et al.  4-Aminobiphenyl hemoglobin adducts in fetuses exposed to the tobacco smoke carcinogen in utero. , 1991, Journal of the National Cancer Institute.

[60]  B. Ames,et al.  Identifying environmental chemicals causing mutations and cancer. , 1979, Science.

[61]  T. Eling,et al.  Studies on the uptake, metabolism, and release of endogenous and exogenous chemicals by use of the isolated perfused lung , 1976, Environmental health perspectives.

[62]  W. Eduard,et al.  Quantitative exposure assessment of organic dust , 2009 .

[63]  M. Hristova,et al.  Cellular and Environmental Electrophiles: Balancing Redox Signaling, Inflammation, and Cell Death Pathways , 2008 .

[64]  Stephen W. Edwards,et al.  FORUM Systems Biology and Mode of Action Based Risk Assessment , 2008 .

[65]  F. Bruggeman,et al.  The nature of systems biology. , 2007, Trends in microbiology.

[66]  S. Bonassi,et al.  Children's exposure to environmental pollutants and biomarkers of genetic damage. I. Overview and critical issues. , 2006, Mutation research.

[67]  S. Bonassi,et al.  Children's exposure to environmental pollutants and biomarkers of genetic damage. II. Results of a comprehensive literature search and meta-analysis. , 2006, Mutation research.

[68]  T. Marrs,et al.  Variables influencing the toxic response to organophosphates in humans. , 2003, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[69]  M. Feldmann,et al.  Anti-TNF alpha therapy of rheumatoid arthritis: what have we learned? , 2001, Annual review of immunology.

[70]  I. M. Neiman,et al.  [Inflammation and cancer]. , 1974, Patologicheskaia fiziologiia i eksperimental'naia terapiia.