CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria
暂无分享,去创建一个
Ivan Erill | Sefa Kiliç | Elliot R. White | Dinara M. Sagitova | Joseph P. Cornish | Joseph P. Cornish | Ivan Erill | Sefa Kiliç | Elliot R. White | Sefa Kılıç
[1] Chih Lee,et al. LASAGNA: A novel algorithm for transcription factor binding site alignment , 2013, BMC Bioinformatics.
[2] Obi L. Griffith,et al. ORegAnno: an open-access community-driven resource for regulatory annotation , 2007, Nucleic Acids Res..
[3] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[4] Kenta Nakai,et al. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information , 2007, Nucleic Acids Res..
[5] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[6] M. Sagot,et al. Promoter sequences and algorithmical methods for identifying them. , 1999, Research in microbiology.
[7] O. Kuipers,et al. Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation , 2009, Microbiology and Molecular Biology Reviews.
[8] Dieter Jahn,et al. PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes , 2008, Nucleic Acids Res..
[9] Pierre-Étienne Jacques,et al. MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis , 2005, Bioinform..
[10] Victor J. DiRita,et al. Regulatory Networks Controlling Vibrio cholerae Virulence Gene Expression , 2007, Infection and Immunity.
[11] R. Blumenthal,et al. Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR , 2007, BMC Microbiology.
[12] Alex Bateman,et al. Databases, data tombs and dust in the wind , 2008, Bioinform..
[13] Fangping Mu,et al. Improved predictions of transcription factor binding sites using physicochemical features of DNA , 2012, Nucleic acids research.
[14] E. Mardis. ChIP-seq: welcome to the new frontier , 2007, Nature Methods.
[15] Panayiotis V. Benos,et al. STAMP: a web tool for exploring DNA-binding motif similarities , 2007, Nucleic Acids Res..
[16] Igor Zwir,et al. Dissecting the PhoP regulatory network of Escherichia coli and Salmonella enterica. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[17] Tatiana A. Tatusova,et al. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy , 2011, Nucleic Acids Res..
[18] Julio Collado-Vides,et al. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more , 2012, Nucleic Acids Res..
[19] Leelavati Narlikar,et al. MuMoD: a Bayesian approach to detect multiple modes of protein–DNA binding from genome-wide ChIP data , 2012, Nucleic acids research.
[20] Andreas Tauch,et al. CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands , 2011, Nucleic Acids Res..
[21] Stephen Busby,et al. Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes. , 2004, Current opinion in microbiology.
[22] Sandhya Mehrotra,et al. Combinatorial Control of Gene Expression , 2013, BioMed research international.
[23] Inna Dubchak,et al. RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes , 2013, BMC Genomics.
[24] L. Mirny,et al. Different gene regulation strategies revealed by analysis of binding motifs. , 2009, Trends in genetics : TIG.