Nontuberculous mycobacteria in respiratory infections: advances in diagnosis and identification.

[1]  M. Casal,et al.  Evaluation of the GenoType Mycobacteria Direct Assay for Detection of Mycobacterium tuberculosis Complex and Four Atypical Mycobacterial Species in Clinical Samples , 2006, Journal of Clinical Microbiology.

[2]  M. Salfinger,et al.  Lessons from a proficiency testing event for acid-fast microscopy. , 2001, Chest.

[3]  J. Wolfe,et al.  Necessity of Quality-Controlled 16S rRNA Gene Sequence Databases: Identifying Nontuberculous MycobacteriumSpecies , 2001, Journal of Clinical Microbiology.

[4]  Benjamin A Lipsky,et al.  Factors affecting the clinical value of microscopy for acid-fast bacilli. , 1984, Reviews of infectious diseases.

[5]  K. Carroll,et al.  Identification of Mycobacterium spp. by Using a Commercial 16S Ribosomal DNA Sequencing Kit and Additional Sequencing Libraries , 2002, Journal of Clinical Microbiology.

[6]  R. Wallace,,et al.  Antimicrobial Susceptibility Testing, Drug Resistance Mechanisms, and Therapy of Infections with Nontuberculous Mycobacteria , 2012, Clinical Microbiology Reviews.

[7]  Robert Horsburgh,et al.  An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. , 2007, American journal of respiratory and critical care medicine.

[8]  T. Kirikae,et al.  Comprehensive Multicenter Evaluation of a New Line Probe Assay Kit for Identification of Mycobacterium Species and Detection of Drug-Resistant Mycobacterium tuberculosis , 2011, Journal of Clinical Microbiology.

[9]  M. Salfinger,et al.  False-positive results for Mycobacterium celatum with the AccuProbe Mycobacterium tuberculosis complex assay. , 2000, Journal of clinical microbiology.

[10]  Soo Hyun Lee,et al.  Macrolide treatment for Mycobacterium abscessus and Mycobacterium massiliense infection and inducible resistance. , 2012, American journal of respiratory and critical care medicine.

[11]  Xiaotian Zheng,et al.  Rapid Detection of Mycobacterium tuberculosis in Contaminated BACTEC 12B Broth Cultures by Testing with Amplified Mycobacterium Tuberculosis Direct Test , 2001, Journal of Clinical Microbiology.

[12]  Ø. Kommedal,et al.  Simultaneous Sequence Analysis of the 16S rRNA and rpoB Genes by Use of RipSeq Software To Identify Mycobacterium Species , 2010, Journal of Clinical Microbiology.

[13]  C. Daley,et al.  Treatment of pulmonary nontuberculous mycobacterial infections: many questions remain. , 2014, Annals of the American Thoracic Society.

[14]  A. Somoskövi,et al.  Comparison of the Mycobacteria Growth Indicator Tube with MB Redox, Löwenstein-Jensen, and Middlebrook 7H11 Media for Recovery of Mycobacteria in Clinical Specimens , 1999, Journal of Clinical Microbiology.

[15]  G. Pfyffer Mycobacterium: General Characteristics, Laboratory Detection, and Staining Procedures* , 2006 .

[16]  C. Russo,et al.  Evaluation of the New GenoType Mycobacterium Assay for Identification of Mycobacterial Species , 2006, Journal of Clinical Microbiology.

[17]  D. H. Farkas,et al.  Validation of the MycoAlign system for Mycobacterium spp. identification. , 2007, Diagnostic microbiology and infectious disease.

[18]  조상래,et al.  Mycobacterial Genotypes Are Associated With Clinical Manifestation and Progression of Lung Disease Caused by Mycobacterium abscessus and Mycobacterium massiliense , 2013 .

[19]  S. Niemann,et al.  Identification of Mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniques. , 1999, Journal of clinical microbiology.

[20]  M. Raffeld,et al.  Pulmonary nontuberculous mycobacterial disease: prospective study of a distinct preexisting syndrome. , 2008, American journal of respiratory and critical care medicine.

[21]  Takayuki Ezaki,et al.  Mycobacterium species identification--a new approach via dnaJ gene sequencing. , 2007, Systematic and applied microbiology.

[22]  E. Böttger,et al.  Erm(41)-dependent inducible resistance to azithromycin and clarithromycin in clinical isolates of Mycobacterium abscessus. , 2014, The Journal of antimicrobial chemotherapy.

[23]  M. Gismondo,et al.  Multicenter Comparison of ESP Culture System II with BACTEC 460TB and with Lowenstein-Jensen Medium for Recovery of Mycobacteria from Different Clinical Specimens, Including Blood , 1998, Journal of Clinical Microbiology.

[24]  T. Marras,et al.  Isolation Prevalence Of Pulmonary Nontuberculous Mycobacteria, Ontario 2008 , 2010, ATS 2010.

[25]  Nalin Rastogi,et al.  Current Methods in the Molecular Typing of Mycobacterium tuberculosis and Other Mycobacteria , 2014, BioMed research international.

[26]  N. Manca,et al.  Evaluation of INNO-LiPA assay for direct detection of mycobacteria in pulmonary and extrapulmonary specimens. , 2006, The new microbiologica.

[27]  M. Drancourt,et al.  Mycobacterium abscessus multispacer sequence typing , 2013, BMC Microbiology.

[28]  D. Begg,et al.  Development and Validation of a Liquid Medium (M7H9C) for Routine Culture of Mycobacterium avium subsp. paratuberculosis To Replace Modified Bactec 12B Medium , 2013, Journal of Clinical Microbiology.

[29]  H. Soini,et al.  Evaluation of GenoType and LiPA MYCOBACTERIA Assays for Identification of Finnish Mycobacterial Isolates , 2002, Journal of Clinical Microbiology.

[30]  S. Butler-Wu,et al.  Comparison of the Bruker Biotyper and Vitek MS Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Systems for Identification of Mycobacteria Using Simplified Protein Extraction Protocols , 2013, Journal of Clinical Microbiology.

[31]  J. Myers,et al.  Histologic parameters predictive of mycobacterial infection. , 1998, American journal of clinical pathology.

[32]  E. Böttger,et al.  Drug susceptibility distributions in slowly growing non-tuberculous mycobacteria using MGIT 960 TB eXiST. , 2013, International journal of medical microbiology : IJMM.

[33]  Anna Sajduda,et al.  hsp65 PCR-restriction analysis (PRA) with capillary electrophoresis for species identification and differentiation of Mycobacterium kansasii and Mycobacterium chelonae-Mycobacterium abscessus group. , 2012, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[34]  W. Fry,et al.  Amplification of residual DNA sequences in sterile bronchoscopes leading to false-positive PCR results , 1996, Journal of clinical microbiology.

[35]  Enrico Tortoli,et al.  Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus. , 2011, International journal of systematic and evolutionary microbiology.

[36]  S. Rüsch-Gerdes,et al.  Rapid detection of mycobacteria in clinical specimens by using the automated BACTEC 9000 MB system and comparison with radiometric and solid-culture systems , 1997, Journal of clinical microbiology.

[37]  T. Botha,et al.  Improvement in Mycobacterial Yield and Reduced Time to Detection in Pediatric Samples by Use of a Nutrient Broth Growth Supplement , 2009, Journal of Clinical Microbiology.

[38]  Yoon-Hoh Kook,et al.  Identification of Mycobacterial Species by Comparative Sequence Analysis of the RNA Polymerase Gene (rpoB) , 1999, Journal of Clinical Microbiology.

[39]  Young Kil Park,et al.  Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus. , 2011, American journal of respiratory and critical care medicine.

[40]  Henry D. Isenberg,et al.  Clinical Microbiology Procedures Handbook , 2004 .

[41]  J. Gaillard,et al.  Inaccuracy of Single-Target Sequencing for Discriminating Species of the Mycobacterium abscessus Group , 2009, Journal of Clinical Microbiology.

[42]  M. Salfinger,et al.  Pseudoepidemic of nontuberculous mycobacteria due to a contaminated bronchoscope cleaning machine. Report of an outbreak and review of the literature. , 1992, Chest.

[43]  S. Holland,et al.  Prevalence of nontuberculous mycobacterial lung disease in U.S. Medicare beneficiaries. , 2012, American journal of respiratory and critical care medicine.

[44]  K. Lee,et al.  Clinical significance of the differentiation between Mycobacterium avium and Mycobacterium intracellulare in M avium complex lung disease. , 2012, Chest.

[45]  M. Salfinger,et al.  Laboratory diagnosis of nontuberculous mycobacteria. , 2002, Clinics in chest medicine.

[46]  E. Tortoli The new mycobacteria: an update. , 2006, FEMS immunology and medical microbiology.

[47]  W. Ludwig,et al.  Differentiation of Phylogenetically Related Slowly Growing Mycobacteria Based on 16S-23S rRNA Gene Internal Transcribed Spacer Sequences , 1998, Journal of Clinical Microbiology.

[48]  T. Myers,et al.  New Rapid Scheme for Distinguishing the Subspecies of the Mycobacterium abscessus Group and Identifying Mycobacterium massiliense Isolates with Inducible Clarithromycin Resistance , 2013, Journal of Clinical Microbiology.

[49]  R. Wallace,,et al.  Absence of Mycobacterium intracellulare and Presence of Mycobacterium chimaera in Household Water and Biofilm Samples of Patients in the United States with Mycobacterium avium Complex Respiratory Disease , 2013, Journal of Clinical Microbiology.

[50]  John Turnidge,et al.  Setting and Revising Antibacterial Susceptibility Breakpoints , 2007, Clinical Microbiology Reviews.

[51]  H. Kasai,et al.  Differentiation of Phylogenetically Related Slowly Growing Mycobacteria by Their gyrB Sequences , 2000, Journal of Clinical Microbiology.

[52]  T. Ezaki,et al.  Evaluation of the Invader Assay with the BACTEC MGIT 960 System for Prompt Isolation and Identification of Mycobacterial Species from Clinical Specimens , 2007, Journal of Clinical Microbiology.

[53]  A. D. De Bel,et al.  Sampling and Decontamination Method for Culture of Nontuberculous Mycobacteria in Respiratory Samples of Cystic Fibrosis Patients , 2013, Journal of Clinical Microbiology.

[54]  R. Dietze,et al.  Increased Sensitivity in Diagnosis of Tuberculosis in HIV-Positive Patients through the Small-Membrane-Filter Method of Microscopy , 2013, Journal of Clinical Microbiology.

[55]  J. Parkhill,et al.  Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study , 2013, The Lancet.

[56]  E. Tortoli,et al.  Identification of 54 Mycobacterial Species by PCR-Restriction Fragment Length Polymorphism Analysis of the hsp65Gene , 2001, Journal of Clinical Microbiology.

[57]  J. Wolfe,et al.  Rapid Molecular Detection of Macrolide Resistance in the Mycobacterium avium Complex: Are We There Yet? , 2013, Journal of Clinical Microbiology.

[58]  H. Gruft Evaluation of mycobacteriology laboratories: the acid-fast smear. , 1978, Health laboratory science.

[59]  R. Dietze,et al.  The Small Membrane Filter Method of Microscopy to Diagnose Pulmonary Tuberculosis , 2012, Journal of Clinical Microbiology.

[60]  G. Bloemberg,et al.  Acquisition of clarithromycin resistance mutations in the 23S rRNA gene of Mycobacterium abscessus in the presence of inducible erm(41). , 2012, The Journal of antimicrobial chemotherapy.

[61]  T. Kiehn,et al.  Pulmonary nodule due to Mycobacterium haemophilum in an immunocompetent host. , 1999, American journal of respiratory and critical care medicine.

[62]  Mary Ann Blosky,et al.  Nontuberculous mycobacterial lung disease prevalence at four integrated health care delivery systems. , 2010, American journal of respiratory and critical care medicine.

[63]  E. Böttger,et al.  Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory , 1993, Journal of clinical microbiology.

[64]  Natalia Montiel Quezel-Guerraz,et al.  Evaluation of the Speed-oligo® Mycobacteria assay for identification of Mycobacterium spp. from fresh liquid and solid cultures of human clinical samples. , 2010, Diagnostic microbiology and infectious disease.

[65]  T. Marras,et al.  Isolation prevalence of pulmonary non-tuberculous mycobacteria in Ontario, 1997–2003 , 2007, Thorax.

[66]  T. Marras,et al.  Pulmonary Nontuberculous Mycobacterial Disease, Ontario, Canada, 1998–2010 , 2013, Emerging infectious diseases.

[67]  E. Tortoli Impact of Genotypic Studies on Mycobacterial Taxonomy: the New Mycobacteria of the 1990s , 2003, Clinical Microbiology Reviews.

[68]  Enrico Tortoli,et al.  Evaluation of INNO-LiPA MYCOBACTERIA v2: Improved Reverse Hybridization Multiple DNA Probe Assay for Mycobacterial Identification , 2003, Journal of Clinical Microbiology.

[69]  K. Waites,et al.  Comparison of the MB/BacT System with a Revised Antibiotic Supplement Kit to the BACTEC 460 System for Detection of Mycobacteria in Clinical Specimens , 1998, Journal of Clinical Microbiology.

[70]  K Okuzumi,et al.  Nucleotide sequence comparison of the mycobacterial dnaJ gene and PCR-restriction fragment length polymorphism analysis for identification of mycobacterial species. , 1994, International journal of systematic bacteriology.

[71]  A. Ramsay,et al.  Comparison of LED and Conventional Fluorescence Microscopy for Detection of Acid Fast Bacilli in a Low-Incidence Setting , 2011, PloS one.

[72]  W. Schaffner,et al.  American College of Chest Physicians and American Association for Bronchology [corrected] consensus statement: prevention of flexible bronchoscopy-associated infection. , 2005, Chest.

[73]  U. Reischl,et al.  Analytical Performance of the Roche LightCycler® Mycobacterium Detection Kit for the Diagnosis of Clinically Important Mycobacterial Species , 2011, PloS one.

[74]  J. T. Crawford,et al.  Turnaround times for mycobacterial cultures , 1997, Journal of clinical microbiology.

[75]  P. Gilligan,et al.  Proficiency testing of clinical microbiology laboratories using modified decontamination procedures for detection of nontuberculous mycobacteria in sputum samples from cystic fibrosis patients. The Nontuberculous Mycobacteria in Cystic Fibrosis Study Group , 1997, Journal of Clinical Microbiology.

[76]  S. Shin,et al.  Clinical significance of mycobacterial genotyping in Mycobacterium avium lung disease in Korea. , 2012, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[77]  F. Portaels,et al.  Growth of mycobacteria in relation to the pH of the medium. , 1982, Annales de microbiologie.

[78]  Frank,et al.  Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis , 1993, Journal of clinical microbiology.

[79]  G. Pfyffer,et al.  The new diagnostic mycobacteriology laboratory , 1994, European Journal of Clinical Microbiology and Infectious Diseases.

[80]  B. D. de Jong,et al.  Fluorescein diacetate vital staining allows earlier diagnosis of rifampicin-resistant tuberculosis. , 2012, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[81]  K. Feldmann,et al.  Diagnosis of mycobacterial infections by nucleic acid amplification: 18-month prospective study , 1996, Journal of clinical microbiology.

[82]  E. Tortoli Identification of Mycobacteria by Using INNO LiPA , 2002, Journal of Clinical Microbiology.

[83]  M. Morgan,et al.  Multicenter Evaluation of the BACTEC MGIT 960 System for Recovery of Mycobacteria , 1999, Journal of Clinical Microbiology.

[84]  Enrico Tortoli,et al.  Phylogeny of the genus Mycobacterium: many doubts, few certainties. , 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[85]  E. Böttger,et al.  Identification of mycobacteria by PCR-based sequence determination of the 32-kilodalton protein gene , 1994, Journal of clinical microbiology.

[86]  Nalin Rastogi,et al.  Multilocus sequence typing scheme for the Mycobacterium abscessus complex. , 2014, Research in microbiology.

[87]  R. Wallace,,et al.  Identification of mutations in 23S rRNA gene of clarithromycin-resistant Mycobacterium intracellulare , 1994, Antimicrobial Agents and Chemotherapy.

[88]  Robert Garland,et al.  American College of Chest Physicians and American Association for Bronchology Consensus Statement , 2005, Chest.

[89]  P. Berche,et al.  hsp65 Sequencing for Identification of Rapidly Growing Mycobacteria , 1999, Journal of Clinical Microbiology.

[90]  J. Lundgren,et al.  Disseminated Infection with Mycobacterium genavense: a Challenge to Physicians and Mycobacteriologists , 1999, Journal of Clinical Microbiology.

[91]  H. Grewal,et al.  Direct Detection of Mycobacterial Species in Pulmonary Specimens by Two Rapid Amplification Tests, the Gen-Probe Amplified Mycobacterium tuberculosis Direct Test and the GenoType Mycobacteria Direct Test , 2009, Journal of Clinical Microbiology.

[92]  D. Honeybourne,et al.  An audit of bronchoscopy practice in the United Kingdom: a survey of adherence to national guidelines. , 1997, Thorax.

[93]  E. Böttger,et al.  Species identification of mycobacteria using rDNA sequencing. , 1998, Methods in molecular biology.

[94]  C. Steiner,et al.  Nontuberculous Mycobacteria–associated Lung Disease in Hospitalized Persons, United States, 1998–2005 , 2009, Emerging infectious diseases.

[95]  H. Takeyama,et al.  Correlation between variable-number tandem-repeat-based genotypes and drug susceptibility in Mycobacterium avium isolates , 2011, European Journal of Clinical Microbiology & Infectious Diseases.

[96]  T. B. Taylor,et al.  Routine use of PCR-restriction fragment length polymorphism analysis for identification of mycobacteria growing in liquid media , 1997, Journal of clinical microbiology.

[97]  V. Jarlier,et al.  Evaluation of the Fluo-RAL Module for Detection of Tuberculous and Nontuberculous Acid-Fast Bacilli by Fluorescence Microscopy , 2013, Journal of Clinical Microbiology.

[98]  M. Ebina,et al.  Association between mycobacterial genotypes and disease progression in Mycobacterium avium pulmonary infection , 2009, Thorax.

[99]  H. Soini,et al.  Evaluation of a novel strip test, GenoType Mycobacterium CM/AS, for species identification of mycobacterial cultures. , 2006, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[100]  C. Goss,et al.  Respiratory outbreak of Mycobacterium abscessus subspecies massiliense in a lung transplant and cystic fibrosis center. , 2012, American journal of respiratory and critical care medicine.

[101]  Ellen Jo Baron,et al.  Manual of clinical microbiology , 1975 .

[102]  G. Bai,et al.  Differentiation of Mycobacterial Species by PCR-Restriction Analysis of DNA (342 Base Pairs) of the RNA Polymerase Gene (rpoB) , 2001, Journal of Clinical Microbiology.

[103]  R. Kroppenstedt,et al.  Novel Diagnostic Algorithm for Identification of Mycobacteria Using Genus-Specific Amplification of the 16S-23S rRNA Gene Spacer and Restriction Endonucleases , 2000, Journal of Clinical Microbiology.

[104]  R. Wallace,,et al.  Susceptibility Testing of Mycobacteria, Nocardiae, and Other Aerobic Actinomycetes , 2011 .