Directed evolution of Gloeobacter violaceus rhodopsin spectral properties.
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Stanford Schor | Frances H Arnold | Nicholas C. Flytzanis | F. Arnold | R. McIsaac | M. Engqvist | P. Dollinger | M. Abrams | Stanford Schor | R Scott McIsaac | Martin K M Engqvist | Peter Dollinger | Nicholas C Flytzanis | Michael Abrams
[1] Oleg A. Sineshchekov,et al. Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[2] Marion Leclerc,et al. Proteorhodopsin phototrophy in the ocean , 2001, Nature.
[3] Babak Borhan,et al. Tuning the Electronic Absorption of Protein-Embedded All-trans-Retinal , 2012, Science.
[4] H. Khorana,et al. Structure-function studies on bacteriorhodopsin. IX. Substitutions of tryptophan residues affect protein-retinal interactions in bacteriorhodopsin. , 1989, The Journal of biological chemistry.
[5] N. Ferré,et al. The color of rhodopsins at the ab initio multiconfigurational perturbation theory resolution , 2006, Proceedings of the National Academy of Sciences.
[6] E. Querol,et al. Thr-90 Plays a Vital Role in the Structure and Function of Bacteriorhodopsin* , 2004, Journal of Biological Chemistry.
[7] W. D. de Vos,et al. Potential of proton-pumping rhodopsins: engineering photosystems into microorganisms. , 2013, Trends in biotechnology.
[8] Jessica Siltberg-Liberles,et al. Natural and Engineered Photoactivated Nucleotidyl Cyclases for Optogenetic Applications* , 2010, The Journal of Biological Chemistry.
[9] E. Bamberg,et al. Channelrhodopsin-2, a directly light-gated cation-selective membrane channel , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[10] Alan D. Chave,et al. Investigations of ambient light emission at deep‐sea hydrothermal vents , 2002 .
[11] Christopher A. Voigt,et al. The promise of optogenetics in cell biology: interrogating molecular circuits in space and time , 2011, Nature Methods.
[12] Marc Ostermeier,et al. Mathematical expressions useful in the construction, description and evaluation of protein libraries. , 2005, Biomolecular engineering.
[13] S. Subramaniam,et al. Structural insights into the mechanism of proton pumping by bacteriorhodopsin , 2003, FEBS letters.
[14] H. Khorana,et al. Effect of genetic modification of tyrosine-185 on the proton pump and the blue-to-purple transition in bacteriorhodopsin. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[15] D. G. Gibson,et al. Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.
[16] E. Bamberg,et al. Aspartic acids 96 and 85 play a central role in the function of bacteriorhodopsin as a proton pump. , 1989, The EMBO journal.
[17] L. Brown,et al. Bacteriorhodopsin-like proteins of eubacteria and fungi: the extent of conservation of the haloarchaeal proton-pumping mechanism , 2006, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
[18] Adam E. Cohen,et al. Electrical Spiking in Escherichia coli Probed with a Fluorescent Voltage-Indicating Protein , 2011, Science.
[19] J. Lanyi,et al. Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna. , 2009, Biochemistry.
[20] H. Khorana,et al. Substitution of amino acids Asp-85, Asp-212, and Arg-82 in bacteriorhodopsin affects the proton release phase of the pump and the pK of the Schiff base. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[21] Site-directed mutagenesis in bacteriorhodopsin mutants and their characterization for bioelectrical and biotechnological equipment , 2012, Biotechnology Letters.
[22] J. Herzfeld,et al. Site-directed isotope labeling and ATR-FTIR difference spectroscopy of bacteriorhodopsin: the peptide carbonyl group of Tyr 185 is structurally active during the bR-->N transition. , 1995, Biochemistry.
[23] D. Baylor,et al. Effects of modified chromophores on the spectral sensitivity of salamander, squirrel and macaque cones. , 1990, The Journal of physiology.
[24] Chentao Lin,et al. Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis , 2008, Science.
[25] Carl E. Bauer,et al. AppA Is a Blue Light Photoreceptor that Antirepresses Photosynthesis Gene Expression in Rhodobacter sphaeroides , 2002, Cell.
[26] H Luecke,et al. Structural changes in bacteriorhodopsin during ion transport at 2 angstrom resolution. , 1999, Science.
[27] Koji Nakanishi,et al. Application of Artificial Pigments to Structure Determination and Study of Photoinduced Transformations of Retinal Proteins , 1995 .
[28] S. Waschuk,et al. Screening and characterization of proteorhodopsin color-tuning mutations in Escherichia coli with endogenous retinal synthesis. , 2008, Biochimica et biophysica acta.
[29] B. Schobert,et al. Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore , 2008, Proceedings of the National Academy of Sciences.
[30] R. Mathies,et al. The first step in vision occurs in femtoseconds: complete blue and red spectral studies. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[31] M. Homma,et al. Spectral Tuning in Sensory Rhodopsin I from Salinibacter ruber* , 2011, The Journal of Biological Chemistry.
[32] H. Khorana,et al. Replacement of leucine-93 by alanine or threonine slows down the decay of the N and O intermediates in the photocycle of bacteriorhodopsin: implications for proton uptake and 13-cis-retinal----all-trans-retinal reisomerization. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[33] T. Ishizuka,et al. Molecular Determinants Differentiating Photocurrent Properties of Two Channelrhodopsins from Chlamydomonas* , 2009, Journal of Biological Chemistry.
[34] Stefan R. Pulver,et al. Independent Optical Excitation of Distinct Neural Populations , 2014, Nature Methods.
[35] N. Ferré,et al. Quantum chemical modeling of rhodopsin mutants displaying switchable colors. , 2012, Physical chemistry chemical physics : PCCP.
[36] J. Antón,et al. Xanthorhodopsin: A Proton Pump with a Light-Harvesting Carotenoid Antenna , 2005, Science.
[37] J. Bowmaker,et al. Visual pigments and the photic environment: The cottoid fish of Lake Baikal , 1994, Vision Research.
[38] J. Spudich,et al. Retinylidene proteins: structures and functions from archaea to humans. , 2000, Annual review of cell and developmental biology.
[39] H. Khorana,et al. Effects of amino acid substitutions in the F helix of bacteriorhodopsin. Low temperature ultraviolet/visible difference spectroscopy. , 1988, The Journal of biological chemistry.
[40] Lief E. Fenno,et al. The Microbial Opsin Family of Optogenetic Tools , 2011, Cell.
[41] Sadashiva S. Karnik,et al. Structure-Function Studies on Bacteriorhodopsin , 1987 .
[42] R. Mathies,et al. Conical intersection dynamics of the primary photoisomerization event in vision , 2010, Nature.
[43] M. Nielsen. Model systems for understanding absorption tuning by opsin proteins. , 2009, Chemical Society reviews.
[44] Masakatsu Watanabe,et al. A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis , 2002, Nature.
[45] W. Stoeckenius,et al. Bacteriorhodopsin: a light-driven proton pump in Halobacterium Halobium. , 1975, Biophysical journal.
[46] Patrick S. Stumpf,et al. Light Modulation of Cellular cAMP by a Small Bacterial Photoactivated Adenylyl Cyclase, bPAC, of the Soil Bacterium Beggiatoa*♦ , 2010, The Journal of Biological Chemistry.
[47] M. Olivucci,et al. Origin of Fluorescence in 11-cis Locked Bovine Rhodopsin. , 2012, Journal of chemical theory and computation.
[48] S. Haacke,et al. Ultrafast photo-induced reaction dynamics in bacteriorhodopsin and its Trp mutants , 2010 .
[49] Robert R. Birge,et al. Directed evolution of bacteriorhodopsin for applications in bioelectronics , 2013, Journal of The Royal Society Interface.
[50] Oliver P. Ernst,et al. Channelrhodopsin-1 Initiates Phototaxis and Photophobic Responses in Chlamydomonas by Immediate Light-Induced Depolarization[W] , 2008, The Plant Cell Online.
[51] J. Spudich,et al. Characterization of a Highly Efficient Blue-shifted Channelrhodopsin from the Marine Alga Platymonas subcordiformis* , 2013, The Journal of Biological Chemistry.
[52] J. Spudich,et al. Spectroscopic and Photochemical Characterization of a Deep Ocean Proteorhodopsin* , 2003, Journal of Biological Chemistry.
[53] K. Bravaya,et al. An opsin shift in rhodopsin: retinal S0-S1 excitation in protein, in solution, and in the gas phase. , 2007, Journal of the American Chemical Society.
[54] D. Maclaurin,et al. Optical recording of action potentials in mammalian neurons using a microbial rhodopsin , 2011, Nature Methods.
[55] H. Khorana,et al. Bacteriorhodopsin mutants containing single substitutions of serine or threonine residues are all active in proton translocation. , 1991, The Journal of biological chemistry.
[56] Minoru Sakurai,et al. Study of the Opsin Shift of Bacteriorhodopsin: Insight from QM/MM Calculations with Electronic Polarization Effects of the Protein Environment , 2001 .
[57] D. Hunt,et al. Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish in Lake Baikal , 1996, Vision Research.
[58] Å. Nilsson,et al. Threonine-89 participates in the active site of bacteriorhodopsin: evidence for a role in color regulation and Schiff base proton transfer. , 1997, Biochemistry.
[59] Jan Liphardt,et al. Potential of light-harvesting proton pumps for bioenergy applications. , 2010, Current opinion in biotechnology.
[60] B. Roelofsen,et al. Molecular membrane biology: editor J. A. Lucy, Taylor and Francis, £45.00 (individual); £89.00 (institutional) , 1995 .
[61] T. Maiti,et al. L105K mutant of proteorhodopsin. , 2012, Biochemistry.
[62] T. Kikukawa,et al. Photoinduced proton release in proteorhodopsin at low pH: the possibility of a decrease in the pK(a) of Asp227. , 2012, Biochemistry.
[63] N. Calimet,et al. The influence of a transmembrane pH gradient on protonation probabilities of bacteriorhodopsin: the structural basis of the back-pressure effect. , 2004, Journal of molecular biology.
[64] S. Subramaniam,et al. Hydrophobic amino acids in the retinal-binding pocket of bacteriorhodopsin. , 1993, The Journal of biological chemistry.
[65] Torsten Schwede,et al. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling , 2006, Bioinform..
[66] S. Hayashi,et al. A Blue-shifted Light-driven Proton Pump for Neural Silencing* , 2013, The Journal of Biological Chemistry.
[67] T. Schwede,et al. Protein structure homology modeling using SWISS-MODEL workspace , 2008, Nature Protocols.
[68] E. Querol,et al. The role of proline residues in the dynamics of transmembrane helices: the case of bacteriorhodopsin , 2006, Molecular membrane biology.
[69] H. Khorana,et al. Protonation state of Asp (Glu)-85 regulates the purple-to-blue transition in bacteriorhodopsin mutants Arg-82----Ala and Asp-85----Glu: the blue form is inactive in proton translocation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[70] T. Kikukawa,et al. A light-driven proton pump from Haloterrigena turkmenica: functional expression in Escherichia coli membrane and coupling with a H+ co-transporter. , 2006, Biochemical and biophysical research communications.
[71] D. Mould,et al. Development of hydrophobicity parameters to analyze proteins which bear post- or cotranslational modifications. , 1991, Analytical biochemistry.
[72] P. Saeedi,et al. Generation and analysis of bacteriorhodopsin mutants with the potential for biotechnological applications , 2012, Bioengineered.
[73] R. Neutze,et al. Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation , 2010, PLoS biology.
[74] H. Khorana,et al. Vibrational spectroscopy of bacteriorhodopsin mutants. Evidence that Thr-46 and Thr-89 form part of a transient network of hydrogen bonds. , 1992, The Journal of biological chemistry.
[75] E. Bamberg,et al. Channelrhodopsin-1: A Light-Gated Proton Channel in Green Algae , 2002, Science.
[76] D. Kleinfeld,et al. ReaChR: A red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation , 2013, Nature Neuroscience.
[77] E. Bamberg,et al. Chloride and proton transport in bacteriorhodopsin mutant D85T: different modes of ion translocation in a retinal protein. , 1997, Journal of molecular biology.