Convolutional Invasion and Expansion Networks for Tumor Growth Prediction

Tumor growth is associated with cell invasion and mass-effect, which are traditionally formulated by mathematical models, namely reaction-diffusion equations and biomechanics. Such models can be personalized based on clinical measurements to build the predictive models for tumor growth. In this paper, we investigate the possibility of using deep convolutional neural networks to directly represent and learn the cell invasion and mass-effect, and to predict the subsequent involvement regions of a tumor. The invasion network learns the cell invasion from information related to metabolic rate, cell density, and tumor boundary derived from multimodal imaging data. The expansion network models the mass-effect from the growing motion of tumor mass. We also study different architectures that fuse the invasion and expansion networks, in order to exploit the inherent correlations among them. Our network can easily be trained on population data and personalized to a target patient, unlike most previous mathematical modeling methods that fail to incorporate population data. Quantitative experiments on a pancreatic tumor data set show that the proposed method substantially outperforms a state-of-the-art mathematical model-based approach in both accuracy and efficiency, and that the information captured by each of the two subnetworks is complementary.

[1]  P. Friedl,et al.  Classifying collective cancer cell invasion , 2012, Nature Cell Biology.

[2]  Ronald M. Summers,et al.  Kidney Tumor Growth Prediction by Coupling Reaction–Diffusion and Biomechanical Model , 2013, IEEE Transactions on Biomedical Engineering.

[3]  Ronald M. Summers,et al.  Improving Computer-Aided Detection Using Convolutional Neural Networks and Random View Aggregation , 2015, IEEE Transactions on Medical Imaging.

[4]  Christos Davatzikos,et al.  Modeling Glioma Growth and Mass Effect in 3D MR Images of the Brain , 2007, MICCAI.

[5]  Junzhou Huang,et al.  WSISA: Making Survival Prediction from Whole Slide Histopathological Images , 2017, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[6]  Marc'Aurelio Ranzato,et al.  Video (language) modeling: a baseline for generative models of natural videos , 2014, ArXiv.

[7]  Ce Liu,et al.  Exploring new representations and applications for motion analysis , 2009 .

[8]  Ronald M. Summers,et al.  Tumor growth prediction with reaction-diffusion and hyperelastic biomechanical model by physiological data fusion , 2015, Medical Image Anal..

[9]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[10]  E. Fishman,et al.  Recent progress in pancreatic cancer , 2013, CA: a cancer journal for clinicians.

[11]  Sergey Levine,et al.  Unsupervised Learning for Physical Interaction through Video Prediction , 2016, NIPS.

[12]  Lawrence D. Jackel,et al.  Backpropagation Applied to Handwritten Zip Code Recognition , 1989, Neural Computation.

[13]  Mark W. Schmidt,et al.  Learning a Classification-based Glioma Growth Model Using MRI Data , 2006, J. Comput..

[14]  J. Murray,et al.  A quantitative model for differential motility of gliomas in grey and white matter , 2000, Cell proliferation.

[15]  Bernt Schiele,et al.  Long-Term Image Boundary Extrapolation , 2016, ArXiv.

[16]  Thomas Brox,et al.  High Accuracy Optical Flow Estimation Based on a Theory for Warping , 2004, ECCV.

[17]  Guigang Zhang,et al.  Deep Learning , 2016, Int. J. Semantic Comput..

[18]  Leo Joskowicz,et al.  Prediction of Brain MR Scans in Longitudinal Tumor Follow-Up Studies , 2012, MICCAI.

[19]  O. Warburg [Origin of cancer cells]. , 1956, Oncologia.

[20]  Ronald M. Summers,et al.  Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique , 2016 .

[21]  Cuthbert Dukes,et al.  Origin of Cancer , 1938 .

[22]  Dinggang Shen,et al.  3D Deep Learning for Multi-modal Imaging-Guided Survival Time Prediction of Brain Tumor Patients , 2016, MICCAI.

[23]  Ronald M. Summers,et al.  Patient specific tumor growth prediction using multimodal images , 2014, Medical Image Anal..

[24]  J. Stockman,et al.  Everolimus for Advanced Pancreatic Neuroendocrine Tumors , 2012 .

[25]  Antti Honkela,et al.  A Generative Approach for Image-Based Modeling of Tumor Growth , 2011, IPMI.

[26]  Ronald M. Summers,et al.  Pancreatic Tumor Growth Prediction With Elastic-Growth Decomposition, Image-Derived Motion, and FDM-FEM Coupling , 2017, IEEE Transactions on Medical Imaging.

[27]  Guido Gerig,et al.  User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability , 2006, NeuroImage.

[28]  Hervé Delingette,et al.  Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation , 2005, IEEE Transactions on Medical Imaging.

[29]  Demis Hassabis,et al.  Mastering the game of Go with deep neural networks and tree search , 2016, Nature.

[30]  Junzhou Huang,et al.  Imaging Biomarker Discovery for Lung Cancer Survival Prediction , 2016, MICCAI.

[31]  Max A. Viergever,et al.  Automatic Segmentation of MR Brain Images With a Convolutional Neural Network , 2016, IEEE Transactions on Medical Imaging.

[32]  Christos Davatzikos,et al.  An image-driven parameter estimation problem for a reaction–diffusion glioma growth model with mass effects , 2008, Journal of mathematical biology.

[33]  Ronald M. Summers,et al.  DeepPap: Deep Convolutional Networks for Cervical Cell Classification , 2017, IEEE Journal of Biomedical and Health Informatics.

[34]  David Silver,et al.  Move Evaluation in Go Using Deep Convolutional Neural Networks , 2014, ICLR.

[35]  Andrew Zisserman,et al.  Convolutional Two-Stream Network Fusion for Video Action Recognition , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[36]  Andrew Zisserman,et al.  Two-Stream Convolutional Networks for Action Recognition in Videos , 2014, NIPS.

[37]  Yann LeCun,et al.  Deep multi-scale video prediction beyond mean square error , 2015, ICLR.

[38]  Richard Szeliski,et al.  A Database and Evaluation Methodology for Optical Flow , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[39]  Alex Graves,et al.  Supervised Sequence Labelling with Recurrent Neural Networks , 2012, Studies in Computational Intelligence.

[40]  Neelam Gulati,et al.  Assessment of tumor growth in pancreatic neuroendocrine tumors in von Hippel Lindau syndrome. , 2014, Journal of the American College of Surgeons.

[41]  F. Bosman,et al.  WHO Classification of Tumours of the Digestive System , 2010 .

[42]  Nitish Srivastava,et al.  Unsupervised Learning of Video Representations using LSTMs , 2015, ICML.

[43]  Yann LeCun,et al.  Predicting Deeper into the Future of Semantic Segmentation , 2017, 2017 IEEE International Conference on Computer Vision (ICCV).

[44]  Peter L. Choyke,et al.  Evaluation and management of pancreatic lesions in patients with von Hippel–Lindau disease , 2016, Nature Reviews Clinical Oncology.

[45]  W Cramer,et al.  On the Origin of Cancer* , 1938, British medical journal.

[46]  Ronald M. Summers,et al.  Personalized Pancreatic Tumor Growth Prediction via Group Learning , 2017, MICCAI.