Coupled diffusion-reaction systems with ODE controlled interfaces: existence, uniqueness and an implicit-explicit finite element scheme

Many systems, e.g. biological dynamics, are governed by diffusion-reaction equations on interface-separated domains. Interface conditions are typically described by systems of ordinary differential equations that provide fluxes across the interfaces. Using cellular calcium dynamics as an example of this class of ODE-flux boundary interface problems we prove the existence, uniqueness and boundedness of the solutions by applying comparison theorem, fundamental solution of the parabolic operator and a strategy used in Picard’s existence theorem. Then we propose and analyze an efficient implicit-explicit finite element scheme which is implicit for the parabolic operator and explicit for the nonlinear terms. We show that the stability does not depend on the spatial mesh size. Also the optimal convergence rate in H1 norm is obtained. Numerical experiments illustrate the theoretical results.

[1]  T. Mazel,et al.  Reaction diffusion modeling of calcium dynamics with realistic ER geometry. , 2006, Biophysical journal.

[2]  C. Mammucari,et al.  Calcium at the Center of Cell Signaling: Interplay between Endoplasmic Reticulum, Mitochondria, and Lysosomes. , 2016, Trends in biochemical sciences.

[3]  Michael Fill,et al.  Ryanodine receptor calcium release channels. , 2002, Physiological reviews.

[4]  K. Tsaneva-Atanasova,et al.  A model of calcium waves in pancreatic and parotid acinar cells. , 2003, Biophysical journal.

[5]  Farhan Ali,et al.  Interpreting in vivo calcium signals from neuronal cell bodies, axons, and dendrites: a review , 2019, Neurophotonics.

[6]  A. Friedman Partial Differential Equations of Parabolic Type , 1983 .

[7]  E. Georgoulis,et al.  Discontinuous Galerkin methods for fast reactive mass transfer through semi-permeable membranes , 2016 .

[8]  Rafael A. Rosales,et al.  Calcium Regulation of Single Ryanodine Receptor Channel Gating Analyzed Using HMM/MCMC Statistical Methods , 2004, The Journal of general physiology.

[9]  A. Vlachos,et al.  Spine-to-Dendrite Calcium Modeling Discloses Relevance for Precise Positioning of Ryanodine Receptor-Containing Spine Endoplasmic Reticulum , 2018, Scientific Reports.

[10]  Marco Veneroni,et al.  Reaction–diffusion systems for the microscopic cellular model of the cardiac electric field , 2006 .

[11]  G. Dupont,et al.  Three-Dimensional Model of Sub-Plasmalemmal Ca2+ Microdomains Evoked by the Interplay Between ORAI1 and InsP3 Receptors , 2021, Frontiers in Immunology.

[12]  Chia-Ven Pao,et al.  Nonlinear parabolic and elliptic equations , 1993 .

[13]  C. Luo,et al.  A model of the ventricular cardiac action potential. Depolarization, repolarization, and their interaction. , 1991, Circulation research.

[14]  A. Atri,et al.  A single-pool model for intracellular calcium oscillations and waves in the Xenopus laevis oocyte. , 1993, Biophysical journal.

[15]  Emmanuil H. Georgoulis,et al.  Discontinuous Galerkin Methods for Mass Transfer through Semipermeable Membranes , 2013, SIAM J. Numer. Anal..

[16]  Existence and uniqueness for an elliptic problem with evolution arising in electrodynamics , 2003 .

[17]  Thomas J. R. Hughes,et al.  Isogeometric Analysis: Toward Integration of CAD and FEA , 2009 .

[18]  Paolo Zunino,et al.  ANALYSIS OF PARABOLIC PROBLEMS ON PARTITIONED DOMAINS WITH NONLINEAR CONDITIONS AT THE INTERFACE: APPLICATION TO MASS TRANSFER THROUGH SEMI-PERMEABLE MEMBRANES , 2006 .

[19]  Harald F Hess,et al.  Contacts between the endoplasmic reticulum and other membranes in neurons , 2017, Proceedings of the National Academy of Sciences.

[20]  A. Hodgkin,et al.  A quantitative description of membrane current and its application to conduction and excitation in nerve , 1952, The Journal of physiology.

[21]  Jim Douglas,et al.  Galerkin methods for parabolic equations with nonlinear boundary conditions , 1973 .

[22]  Yoichiro Mori,et al.  Global existence and uniqueness of a three-dimensional model of cellular electrophysiology , 2010 .

[23]  Carlos Jerez-Hanckes,et al.  Boundary integral formulation and semi-implicit scheme coupling for modeling cells under electrical stimulation , 2017, Numerische Mathematik.

[24]  M. Lenoir Optimal isoparametric finite elements and error estimates for domains involving curved boundaries , 1986 .

[25]  D. Clapham,et al.  Calcium signaling , 1995, Cell.

[26]  J. Keizer,et al.  Ryanodine receptor adaptation and Ca2+(-)induced Ca2+ release-dependent Ca2+ oscillations. , 1996, Biophysical journal.

[27]  Gillian Queisser,et al.  What Is Required for Neuronal Calcium Waves? A Numerical Parameter Study , 2018, The Journal of Mathematical Neuroscience.