MutLα and Proliferating Cell Nuclear Antigen Share Binding Sites on MutSβ*

MutSβ (MSH2-MSH3) mediates repair of insertion-deletion heterologies but also triggers triplet repeat expansions that cause neurological diseases. Like other DNA metabolic activities, MutSβ interacts with proliferating cell nuclear antigen (PCNA) via a conserved motif (QXX(L/I)XXFF). We demonstrate that MutSβ-PCNA complex formation occurs with an affinity of ∼0.1 μm and a preferred stoichiometry of 1:1. However, up to 20% of complexes are multivalent under conditions where MutSβ is in molar excess over PCNA. Conformational studies indicate that the two proteins associate in an end-to-end fashion in solution. Surprisingly, mutation of the PCNA-binding motif of MutSβ not only abolishes PCNA binding, but unlike MutSα, also dramatically attenuates MutSβ-MutLα interaction, MutLα endonuclease activation, and bidirectional mismatch repair. As predicted by these findings, PCNA competes with MutLα for binding to MutSβ, an effect that is blocked by the cell cycle regulator p21CIP1. We propose that MutSβ-MutLα interaction is mediated in part by residues ((L/I)SRFF) embedded within the MSH3 PCNA-binding motif. To our knowledge this is the first case where residues important for PCNA binding also mediate interaction with a second protein. These findings also indicate that MutSβ- and MutSα-initiated repair events differ in fundamental ways.

[1]  Virgil L. Woods,et al.  A conserved MutS homolog connector domain interface interacts with MutL homologs , 2009, Proceedings of the National Academy of Sciences.

[2]  R. Fishel,et al.  Evidence that hMLH3 functions primarily in meiosis and in hMSH2-hMSH3 mismatch repair , 2009, Cancer biology & therapy.

[3]  P. Modrich,et al.  Functions of MutLα, Replication Protein A (RPA), and HMGB1 in 5′-Directed Mismatch Repair* , 2009, The Journal of Biological Chemistry.

[4]  K. Vasquez,et al.  Mismatch repair and nucleotide excision repair proteins cooperate in the recognition of DNA interstrand crosslinks , 2009, Nucleic acids research.

[5]  Rob Willemsen,et al.  Microsatellite repeat instability and neurological disease , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

[6]  L. Rasmussen,et al.  Exonuclease I-dependent Mismatch Repair Binding Site of Mlh1 Required for Characterization of a Highly Conserved Supplemental Material , 2008 .

[7]  P. Hsieh,et al.  DNA mismatch repair: Molecular mechanism, cancer, and ageing , 2008, Mechanisms of Ageing and Development.

[8]  Greg L. Hura,et al.  The MutSα-Proliferating Cell Nuclear Antigen Interaction in Human DNA Mismatch Repair*♦ , 2008, Journal of Biological Chemistry.

[9]  Guo-Min Li,et al.  Mechanisms and functions of DNA mismatch repair , 2008, Cell Research.

[10]  M. Neuberger,et al.  Molecular mechanisms of antibody somatic hypermutation. , 2007, Annual review of biochemistry.

[11]  L. Beese,et al.  Structure of the Human MutSα DNA Lesion Recognition Complex , 2007 .

[12]  Thomas Lengauer,et al.  Mutations in the MutSα interaction interface of MLH1 can abolish DNA mismatch repair , 2006, Nucleic acids research.

[13]  P. Modrich,et al.  Endonucleolytic Function of MutLα in Human Mismatch Repair , 2006, Cell.

[14]  P. Modrich,et al.  DNA mismatch repair: functions and mechanisms. , 2006, Chemical reviews.

[15]  P. Modrich,et al.  Analysis of the excision step in human DNA mismatch repair. , 2006, Methods in enzymology.

[16]  P. Modrich,et al.  Human Mismatch Repair , 2005, Journal of Biological Chemistry.

[17]  A. Tomkinson,et al.  Reconstitution of 5′-Directed Human Mismatch Repair in a Purified System , 2005, Cell.

[18]  T. Kunkel,et al.  DNA mismatch repair. , 2005, Annual review of biochemistry.

[19]  Marc L. Mendillo,et al.  Analysis of the Interaction between the Saccharomyces cerevisiae MSH2-MSH6 and MLH1-PMS1 Complexes with DNA Using a Reversible DNA End-blocking System* , 2005, Journal of Biological Chemistry.

[20]  Su-Ying Wu,et al.  Structural and biochemical studies of human proliferating cell nuclear antigen complexes provide a rationale for cyclin association and inhibitor design. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[21]  J. Jiricny,et al.  Mismatch repair and DNA damage signalling. , 2004, DNA repair.

[22]  P. Modrich,et al.  A defined human system that supports bidirectional mismatch-provoked excision. , 2004, Molecular cell.

[23]  P. Modrich,et al.  Mechanism of 5'-directed excision in human mismatch repair. , 2003, Molecular cell.

[24]  P. Peltomäki Role of DNA mismatch repair defects in the pathogenesis of human cancer. , 2003, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[25]  J. Jiricny,et al.  Mutations within the hMLH1 and hPMS2 Subunits of the Human MutLα Mismatch Repair Factor Affect Its ATPase Activity, but Not Its Ability to Interact with hMutSα* , 2002, The Journal of Biological Chemistry.

[26]  Nianxiang Zhang,et al.  hMutSβ Is Required for the Recognition and Uncoupling of Psoralen Interstrand Cross-Links In Vitro , 2002, Molecular and Cellular Biology.

[27]  Paul Modrich,et al.  DNA Chain Length Dependence of Formation and Dynamics of hMutSα·hMutLα·Heteroduplex Complexes* , 2001, The Journal of Biological Chemistry.

[28]  D I Svergun,et al.  Determination of domain structure of proteins from X-ray solution scattering. , 2001, Biophysical journal.

[29]  H. Kleczkowska,et al.  hMSH3 and hMSH6 interact with PCNA and colocalize with it to replication foci. , 2001, Genes & development.

[30]  T. Kunkel,et al.  Functional Interaction of Proliferating Cell Nuclear Antigen with MSH2-MSH6 and MSH2-MSH3 Complexes* , 2000, The Journal of Biological Chemistry.

[31]  R. Kolodner,et al.  Proliferating cell nuclear antigen and Msh2p-Msh6p interact to form an active mispair recognition complex , 2000, Nature Genetics.

[32]  Anastassis Perrakis,et al.  The crystal structure of DNA mismatch repair protein MutS binding to a G·T mismatch , 2000, Nature.

[33]  D. Myszka,et al.  Improving biosensor analysis , 1999, Journal of molecular recognition : JMR.

[34]  G. Marsischky,et al.  Eukaryotic DNA mismatch repair. , 1999, Current opinion in genetics & development.

[35]  Cyril Bouquet,et al.  ATP hydrolysis-dependent formation of a dynamic ternary nucleoprotein complex with MutS and MutL. , 1999, Nucleic acids research.

[36]  K. Bjornson,et al.  DNA-dependent Activation of the hMutSα ATPase* , 1998, The Journal of Biological Chemistry.

[37]  Paul Modrich,et al.  Isolation of MutSβ from Human Cells and Comparison of the Mismatch Repair Specificities of MutSβ and MutSα* , 1998, The Journal of Biological Chemistry.

[38]  Satya Prakash,et al.  ATP-dependent Assembly of a Ternary Complex Consisting of a DNA Mismatch and the Yeast MSH2-MSH6 and MLH1-PMS1 Protein Complexes* , 1998, The Journal of Biological Chemistry.

[39]  L. Gu,et al.  ATP-dependent interaction of human mismatch repair proteins and dual role of PCNA in mismatch repair. , 1998, Nucleic acids research.

[40]  Satya Prakash,et al.  Enhancement of MSH2–MSH3-mediated mismatch recognition by the yeast MLH1–PMS1 complex , 1997, Current Biology.

[41]  P. Modrich,et al.  DHFR/MSH3 amplification in methotrexate-resistant cells alters the hMutSα/hMutSβ ratio and reduces the efficiency of base–base mismatch repair , 1997 .

[42]  Peter Beighton,et al.  de la Chapelle, A. , 1997 .

[43]  Robert E. Johnson,et al.  Evidence for Involvement of Yeast Proliferating Cell Nuclear Antigen in DNA Mismatch Repair* , 1996, The Journal of Biological Chemistry.

[44]  S. Elledge,et al.  Cdk-interacting protein 1 directly binds with proliferating cell nuclear antigen and inhibits DNA replication catalyzed by the DNA polymerase delta holoenzyme. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Bert Vogelstein,et al.  Hypermutability and mismatch repair deficiency in RER+ tumor cells , 1993, Cell.

[46]  Dmitri I. Svergun,et al.  Determination of the regularization parameter in indirect-transform methods using perceptual criteria , 1992 .

[47]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[48]  P. Modrich,et al.  Isolation and characterization of the Escherichia coli mutL gene product. , 1989, The Journal of biological chemistry.

[49]  Masao Kakudo,et al.  Small Angle Scattering of X-Rays , 1968 .

[50]  O. Kratky X-RAY SMALL ANGLE SCATTERING WITH SUBSTANCES OF BIOLOGICAL INTEREST IN DILUTED SOLUTIONS. , 1963, Progress in biophysics and molecular biology.