The analysis of competing risks data with a focus on estimation of cause-specific and subdistribution hazard ratios from a mixture model

Treatment efficacy in clinical trials is often assessed by time from treatment initiation to occurrence of a certain critical or beneficial event. In most cases the event of interest cannot be observed for all patients, as patients are only followed for a limited time or contact to patients is lost during their follow-up time. Therefore, certain methods were developed in the framework of the so called time-to-event or survival analysis, in order to obtain valid and consistent estimates in the presence of these "censored observations", using all available information. In classical event time analysis only one endpoint exists, as the death of a patient. As patients can die from different causes, in some clinical trials time to one out of two or more mutually exclusive types of event may be of interest. In many oncological studies, for example, time to cancer-specific death is considered as primary endpoint with deaths from other causes acting as so called competing risks. Different methods for data analysis in the competing risks framework were developed in recent years, which either focus on modelling the cause-specific or the subdistribution hazard rate or split the joint distribution of event times and event types into quantities, that can be estimated from observable data. In this work the analysis of event time data in the presence of competing risks is described, including the presentation and discussion of different regression approaches. A major topic of this work is the estimation of cause-specific and subdistribution hazard rates from a mixture model and a new approach using penalized B-splines (P-splines) for estimation of conditional hazard rates in a mixture model is proposed. In order to evaluate the behaviour of the new approach, a simulation study was conducted, using simulation techniques for competing risks data, which are described in detail in this work. The presented regression models were applied to data from a clinical cohort study investigating a risk stratification for cardiac mortality in patients, that survived a myocardial infarction. Finally, the use of the presented methods for event time analysis in the presence of competing risks and results obtained from the simulation study and the data analysis are discussed.

[1]  A. Dreher Modeling Survival Data Extending The Cox Model , 2016 .

[2]  K. Ulm,et al.  Flexible simulation of competing risks data following prespecified subdistribution hazards , 2014 .

[3]  Bo Henry Lindqvist,et al.  Competing risks , 2014, Lifetime data analysis.

[4]  M. C. Jones,et al.  On maximization of the likelihood for the generalized gamma distribution , 2013, Comput. Stat..

[5]  G. Schmidt,et al.  Applying competing risks regression models: an overview , 2012, Lifetime Data Analysis.

[6]  Ewout W Steyerberg,et al.  Competing risks and the clinical community: irrelevance or ignorance? , 2011, Statistics in medicine.

[7]  Mei-Jie Zhang,et al.  A proportional hazards regression model for the subdistribution with right‐censored and left‐truncated competing risks data , 2011, Statistics in medicine.

[8]  J. Dupuy,et al.  Analysis of a semiparametric mixture model for competing risks , 2011 .

[9]  Bryan Lau,et al.  Parametric mixture models to evaluate and summarize hazard ratios in the presence of competing risks with time‐dependent hazards and delayed entry , 2011, Statistics in medicine.

[10]  Mei-Jie Zhang,et al.  Analyzing Competing Risk Data Using the R timereg Package. , 2011, Journal of statistical software.

[11]  M A Nicolaie,et al.  Vertical modeling: A pattern mixture approach for competing risks modeling , 2010, Statistics in medicine.

[12]  Martin Schumacher,et al.  Proportional subdistribution hazards modeling offers a summary analysis, even if misspecified , 2010, Statistics in medicine.

[13]  P C Lambert,et al.  Estimating the crude probability of death due to cancer and other causes using relative survival models , 2010, Statistics in medicine.

[14]  M. Schemper,et al.  The estimation of average hazard ratios by weighted Cox regression , 2009, Statistics in medicine.

[15]  P. Gilbert,et al.  Testing and Estimation of Time‐Varying Cause‐Specific Hazard Ratios with Covariate Adjustment , 2008, Biometrics.

[16]  Ping K Ruan,et al.  Analyses of cumulative incidence functions via non‐parametric multiple imputation , 2008, Statistics in medicine.

[17]  Bryan Lau,et al.  Evaluating competing adverse and beneficial outcomes using a mixture model , 2008, Statistics in medicine.

[18]  Michal Abrahamowicz,et al.  Comparison of algorithms to generate event times conditional on time‐dependent covariates , 2008, Statistics in medicine.

[19]  John P. Klein,et al.  SAS and R functions to compute pseudo-values for censored data regression , 2008, Comput. Methods Programs Biomed..

[20]  Vladimir K. Kaishev,et al.  Modelling the joint distribution of competing risks survival times using copula functions , 2007 .

[21]  F. Aversa,et al.  Competing risk analysis using R: an easy guide for clinicians , 2007, Bone Marrow Transplantation.

[22]  H Putter,et al.  Tutorial in biostatistics: competing risks and multi‐state models , 2007, Statistics in medicine.

[23]  Marinus J C Eijkemans,et al.  Actual and actuarial probabilities of competing risks: apples and lemons. , 2007, The Annals of thoracic surgery.

[24]  Melania Pintilie,et al.  Analysing and interpreting competing risk data , 2007, Statistics in medicine.

[25]  S Chevret,et al.  Misspecified regression model for the subdistribution hazard of a competing risk , 2007, Statistics in medicine.

[26]  Haesook T. Kim Cumulative Incidence in Competing Risks Data and Competing Risks Regression Analysis , 2007, Clinical Cancer Research.

[27]  Sylvie Chevret,et al.  Analysing multicentre competing risks data with a mixed proportional hazards model for the subdistribution , 2006, Statistics in medicine.

[28]  Melania Pintilie,et al.  Competing Risks: A Practical Perspective , 2006 .

[29]  Sylvie Chevret,et al.  Local influence for the subdistribution of a competing risk , 2006, Statistics in medicine.

[30]  D. C. Miller,et al.  In response to: Bodnar E, Blackstone EH. Editorial: An 'actual' problem: another issue of apples and oranges. J Heart Valve Dis 2005; 14:706-708. , 2006, The Journal of heart valve disease.

[31]  Søren Højsgaard,et al.  The R Package geepack for Generalized Estimating Equations , 2005 .

[32]  S Chevret,et al.  A Note on Including Time‐dependent Covariate in Regression Model for Competing Risks Data , 2005, Biometrical journal. Biometrische Zeitschrift.

[33]  John P Klein,et al.  Regression Modeling of Competing Risks Data Based on Pseudovalues of the Cumulative Incidence Function , 2005, Biometrics.

[34]  Sylvie Chevret,et al.  Sample size formula for proportional hazards modelling of competing risks , 2004, Statistics in medicine.

[35]  Laurence L. George,et al.  The Statistical Analysis of Failure Time Data , 2003, Technometrics.

[36]  S. Ng,et al.  An Em-based Semi-parametric Mixture Model Approach to the Regression Analysis of Competing-risks Data , 2022 .

[37]  Trevor Hastie,et al.  The Elements of Statistical Learning , 2001 .

[38]  J. Robins,et al.  Correcting for Noncompliance and Dependent Censoring in an AIDS Clinical Trial with Inverse Probability of Censoring Weighted (IPCW) Log‐Rank Tests , 2000, Biometrics.

[39]  J. Klein,et al.  Survival Analysis: Techniques for Censored and Truncated Data , 1997 .

[40]  M Lunn,et al.  Applying Cox regression to competing risks. , 1995, Biometrics.

[41]  J P Klein,et al.  Statistical methods for dependent competing risks , 1995, Lifetime data analysis.

[42]  Nils Lid Hjort,et al.  On inference in parametric survival data models , 1992 .

[43]  Anthony Y. C. Kuk,et al.  A mixture model combining logistic regression with proportional hazards regression , 1992 .

[44]  J. Robins,et al.  Recovery of Information and Adjustment for Dependent Censoring Using Surrogate Markers , 1992 .

[45]  E L Korn,et al.  Applications of crude incidence curves. , 1992, Statistics in medicine.

[46]  J P Klein,et al.  Bounds on net survival probabilities for dependent competing risks. , 1988, Biometrics.

[47]  S. Zeger,et al.  Longitudinal data analysis using generalized linear models , 1986 .

[48]  Gregg E. Dinse,et al.  A mixture model for the regression analysis of competing risks data , 1985 .

[49]  I. W. Wright Splines in Statistics , 1983 .

[50]  Rupert G. Miller The jackknife-a review , 1974 .

[51]  E. Kaplan,et al.  Nonparametric Estimation from Incomplete Observations , 1958 .