Hyperspectral Image Classification Using Deep Genome Graph-Based Approach

Recently developed hybrid models that stack 3D with 2D CNN in their structure have enjoyed high popularity due to their appealing performance in hyperspectral image classification tasks. On the other hand, biological genome graphs have demonstrated their effectiveness in enhancing the scalability and accuracy of genomic analysis. We propose an innovative deep genome graph-based network (GGBN) for hyperspectral image classification to tap the potential of hybrid models and genome graphs. The GGBN model utilizes 3D-CNN at the bottom layers and 2D-CNNs at the top layers to process spectral–spatial features vital to enhancing the scalability and accuracy of hyperspectral image classification. To verify the effectiveness of the GGBN model, we conducted classification experiments on Indian Pines (IP), University of Pavia (UP), and Salinas Scene (SA) datasets. Using only 5% of the labeled data for training over the SA, IP, and UP datasets, the classification accuracy of GGBN is 99.97%, 96.85%, and 99.74%, respectively, which is better than the compared state-of-the-art methods.

[1]  K. Ye,et al.  One reference genome is not enough , 2019, Genome Biology.

[2]  Rita H. Mumm,et al.  Molecular Plant Breeding as the Foundation for 21st Century Crop Improvement1 , 2008, Plant Physiology.

[3]  Sildomar T. Monteiro,et al.  Evaluating Classification Techniques for Mapping Vertical Geology Using Field-Based Hyperspectral Sensors , 2012, IEEE Transactions on Geoscience and Remote Sensing.

[4]  Lauren Ancel Meyers,et al.  ON THE ABUNDANCE OF POLYPLOIDS IN FLOWERING PLANTS , 2006, Evolution; international journal of organic evolution.

[5]  M. Schatz,et al.  Rate of meristem maturation determines inflorescence architecture in tomato , 2011, Proceedings of the National Academy of Sciences.

[6]  Bing Zhang,et al.  Application of hyperspectral remote sensing for environment monitoring in mining areas , 2012, Environmental Earth Sciences.

[7]  Edward S. Buckler,et al.  Crop genomics: advances and applications , 2011, Nature Reviews Genetics.

[8]  Jon Atli Benediktsson,et al.  Hyperspectral Image Classification With Independent Component Discriminant Analysis , 2011, IEEE Transactions on Geoscience and Remote Sensing.

[9]  Xiuping Jia,et al.  Deep Feature Extraction and Classification of Hyperspectral Images Based on Convolutional Neural Networks , 2016, IEEE Transactions on Geoscience and Remote Sensing.

[10]  B. Davidson Doubling down on siRNAs in the brain , 2019, Nature Biotechnology.

[11]  Zhiming Luo,et al.  Spectral–Spatial Residual Network for Hyperspectral Image Classification: A 3-D Deep Learning Framework , 2018, IEEE Transactions on Geoscience and Remote Sensing.

[12]  Raymond Y. K. Lau,et al.  Synergistic 2D/3D Convolutional Neural Network for Hyperspectral Image Classification , 2020, Remote. Sens..

[13]  Bidyut Baran Chaudhuri,et al.  HybridSN: Exploring 3-D–2-D CNN Feature Hierarchy for Hyperspectral Image Classification , 2019, IEEE Geoscience and Remote Sensing Letters.

[14]  Lorenzo Bruzzone,et al.  Two-Stream Deep Architecture for Hyperspectral Image Classification , 2018, IEEE Transactions on Geoscience and Remote Sensing.

[15]  Bo Li,et al.  Multi-scale 3D deep convolutional neural network for hyperspectral image classification , 2017, 2017 IEEE International Conference on Image Processing (ICIP).

[16]  Adam Godzik,et al.  Multiple flexible structure alignment using partial order graphs , 2005, Bioinform..

[17]  Liangpei Zhang,et al.  An Adaptive Artificial Immune Network for Supervised Classification of Multi-/Hyperspectral Remote Sensing Imagery , 2012, IEEE Transactions on Geoscience and Remote Sensing.

[18]  Bo Du,et al.  Random-Selection-Based Anomaly Detector for Hyperspectral Imagery , 2011, IEEE Transactions on Geoscience and Remote Sensing.

[19]  Mercedes Eugenia Paoletti,et al.  Deep learning classifiers for hyperspectral imaging: A review , 2019 .

[20]  Chuanmin Hu,et al.  Atmospheric Correction of Hyperspectral GCAS Airborne Measurements Over the North Atlantic Ocean and Louisiana Shelf , 2018, IEEE Transactions on Geoscience and Remote Sensing.

[21]  J. Benediktsson,et al.  Remotely Sensed Image Classification Using Sparse Representations of Morphological Attribute Profiles , 2014, IEEE Transactions on Geoscience and Remote Sensing.

[22]  Jon Atli Benediktsson,et al.  Land-Cover Mapping by Markov Modeling of Spatial–Contextual Information in Very-High-Resolution Remote Sensing Images , 2013, Proceedings of the IEEE.

[23]  Jon Atli Benediktsson,et al.  Linear Versus Nonlinear PCA for the Classification of Hyperspectral Data Based on the Extended Morphological Profiles , 2012, IEEE Geoscience and Remote Sensing Letters.

[24]  Piotr Kłosowski,et al.  Deep Learning for Natural Language Processing and Language Modelling , 2018, 2018 Signal Processing: Algorithms, Architectures, Arrangements, and Applications (SPA).

[25]  Stephen M. Mount,et al.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) , 2008, Nature.

[26]  Saurabh Prasad,et al.  Limitations of Principal Components Analysis for Hyperspectral Target Recognition , 2008, IEEE Geoscience and Remote Sensing Letters.

[27]  Trevor Darrell,et al.  Rich Feature Hierarchies for Accurate Object Detection and Semantic Segmentation , 2013, 2014 IEEE Conference on Computer Vision and Pattern Recognition.

[28]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[29]  Christopher J. Lee,et al.  Multiple sequence alignment using partial order graphs , 2002, Bioinform..

[30]  Xiangjun Zou,et al.  High-accuracy multi-camera reconstruction enhanced by adaptive point cloud correction algorithm , 2019, Optics and Lasers in Engineering.

[31]  The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[32]  Takuji Sasaki,et al.  The map-based sequence of the rice genome , 2005, Nature.

[33]  M. Schatz,et al.  Current challenges in de novo plant genome sequencing and assembly , 2012, Genome Biology.

[34]  Mingyou Chen,et al.  3D global mapping of large-scale unstructured orchard integrating eye-in-hand stereo vision and SLAM , 2021, Comput. Electron. Agric..

[35]  Bo Du,et al.  Beyond the Sparsity-Based Target Detector: A Hybrid Sparsity and Statistics-Based Detector for Hyperspectral Images , 2016, IEEE Transactions on Image Processing.

[36]  Naoto Yokoya,et al.  Advances in Hyperspectral Image and Signal Processing: A Comprehensive Overview of the State of the Art , 2017, IEEE Geoscience and Remote Sensing Magazine.

[37]  Patrick Lambert,et al.  3-D Deep Learning Approach for Remote Sensing Image Classification , 2018, IEEE Transactions on Geoscience and Remote Sensing.

[38]  Jon Atli Benediktsson,et al.  Advances in Hyperspectral Image Classification: Earth Monitoring with Statistical Learning Methods , 2013, IEEE Signal Processing Magazine.

[39]  Gabor T. Marth,et al.  A global reference for human genetic variation , 2015, Nature.

[40]  Lorenzo Bruzzone,et al.  Classification of hyperspectral remote sensing images with support vector machines , 2004, IEEE Transactions on Geoscience and Remote Sensing.

[41]  Lorenzo Bruzzone,et al.  Classification of Hyperspectral Images With Regularized Linear Discriminant Analysis , 2009, IEEE Transactions on Geoscience and Remote Sensing.

[42]  Dawn H. Nagel,et al.  The B73 Maize Genome: Complexity, Diversity, and Dynamics , 2009, Science.

[43]  Antonio J. Plaza,et al.  Semisupervised Hyperspectral Image Segmentation Using Multinomial Logistic Regression With Active Learning , 2010, IEEE Transactions on Geoscience and Remote Sensing.

[44]  Yude Yu,et al.  The next-generation sequencing technology and application , 2010, Protein & Cell.

[45]  Wan-Ping Lee,et al.  Fast and accurate genomic analyses using genome graphs , 2019, Nature Genetics.

[46]  Ying Li,et al.  Spectral-Spatial Classification of Hyperspectral Imagery with 3D Convolutional Neural Network , 2017, Remote. Sens..

[47]  Jun Li,et al.  Recent Advances on Spectral–Spatial Hyperspectral Image Classification: An Overview and New Guidelines , 2018, IEEE Transactions on Geoscience and Remote Sensing.