Complete genome sequence of Streptosporangium roseum type strain (NI 9100T)

Streptosporangium roseum Crauch 1955 is the type strain of the species which is the type species of the genus Streptosporangium. The ‘pinkish coiled Streptomyces-like organism with a spore case’ was isolated from vegetable garden soil in 1955. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the family Streptosporangiaceae, and the second largest microbial genome sequence ever deciphered. The 10,369,518 bp long genome with its 9421 protein-coding and 80 RNA genes is a part of the GenomicEncyclopedia ofBacteria andArchaea project.

[1]  G. Garrity Bergey’s Manual® of Systematic Bacteriology , 2012, Springer New York.

[2]  I-Min A. Chen,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..

[3]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[4]  I-Min A. Chen,et al.  IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..

[5]  Lynne A. Goodwin,et al.  Complete genome sequence of Kytococcus sedentarius type strain (541T) , 2009, Standards in genomic sciences.

[6]  Xiumin Zhang,et al.  Streptosporangium canum sp. nov., isolated from soil. , 2009, International journal of systematic and evolutionary microbiology.

[7]  Lynne A. Goodwin,et al.  Complete genome sequence of Kytococcus sedentarius type strain (541 T ) , 2009 .

[8]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[9]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[10]  Nikos Kyrpides,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..

[11]  Christopher J. Lee,et al.  Multiple sequence alignment using partial order graphs , 2002, Bioinform..

[12]  S. Miyadoh,et al.  Proposal to transfer Actinomadura carminata to a new subspecies of the genus Nonomuraea as Nonomuraea roseoviolacea subsp. carminata comb. nov. , 2001, International journal of systematic and evolutionary microbiology.

[13]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[14]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[15]  E. Stackebrandt,et al.  Proposal for a New Hierarchic Classification System, Actinobacteria classis nov. , 1997 .

[16]  E. Stackebrandt,et al.  The Phylogenetic Structure of the Genus Streptosporangium , 1996 .

[17]  M. Aguirre,et al.  Validation of the publication of new names and new combinations previously effectively published outside the IJSB. , 1996, International journal of systematic bacteriology.

[18]  K. Ochi,et al.  Polyacrylamide gel electrophoresis analysis of ribosomal protein AT-L30 from an actinomycete genus, Streptosporangium. , 1992, International journal of systematic bacteriology.

[19]  R. C. Yao,et al.  Streptosporangium carneum sp. nov. isolated from soil , 1990 .

[20]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[21]  D. Minnikin,et al.  Numerical and chemical classification of Actinoplanes and some related actinomycetes , 1990 .

[22]  T. Kudo,et al.  Transfer of Streptosporangium indianense Gupta 1965 to the genus Streptomyces as Streptomyces indiaensis (Gupta 1965) comb. nov , 1987 .

[23]  C. H. Nash,et al.  Streptosporangium fragile sp. nov. , 1983 .

[24]  P. Sneath,et al.  Approved lists of bacterial names. , 1980, The Medical journal of Australia.

[25]  A. Balows Bergey's Manual of Determinative Bacteriology. Eighth Edition , 1975 .

[26]  J. Couch A new genus and family of the Actinomycetales, with a revision of the genus Actinoplanes , 1955 .