β1 integrin signaling governs necroptosis via the chromatin remodeling factor CHD4
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G. Schotta | V. Hornung | F. Cernilogar | Assa Yeroslaviz | Z. Abdullah | Zhiqi Sun | Helena Horvatic | Zeinab Abdullah
[1] Tony D. Southall,et al. NuRD‐independent Mi‐2 activity represses ectopic gene expression during neuronal maturation , 2023, bioRxiv.
[2] V. Hornung,et al. Tumor necrosis factor is a necroptosis-associated alarmin , 2022, bioRxiv.
[3] M. Pellegrini,et al. Epigenetic silencing of RIPK3 in hepatocytes prevents MLKL-mediated necroptosis from contributing to liver pathologies. , 2022, Gastroenterology.
[4] Antoine M. van Oijen,et al. The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families , 2022, bioRxiv.
[5] Frank Y. S. Chuang,et al. KSHV episome tethering sites on host chromosomes and regulation of latency-lytic switch by CHD4 , 2022, Cell reports.
[6] J. Wrana,et al. Myofibroblast YAP/TAZ activation is a key step in organ fibrogenesis , 2022, JCI insight.
[7] J. Rasko,et al. Unique protein interaction networks define the chromatin remodelling module of the NuRD complex , 2021, bioRxiv.
[8] P. Rodrigues,et al. RIPK3 acts as a lipid metabolism regulator contributing to inflammation and carcinogenesis in non-alcoholic fatty liver disease , 2020, Gut.
[9] V. Hornung,et al. C-tag TNF: a reporter system to study TNF shedding , 2020, The Journal of Biological Chemistry.
[10] J. Qin,et al. Myofiber necroptosis promotes muscle stem cell proliferation via releasing Tenascin-C during regeneration , 2020, Cell Research.
[11] André F. Rendeiro,et al. Structural cells are key regulators of organ-specific immune responses , 2020, Nature.
[12] Wenjun Yu,et al. ADNP Controls Gene Expression Through Local Chromatin Architecture by Association With BRG1 and CHD4 , 2020, Frontiers in Cell and Developmental Biology.
[13] P. Cramer,et al. Nucleosome-CHD4 chromatin remodeler structure maps human disease mutations , 2020, eLife.
[14] J. Redondo,et al. Attenuated Epigenetic Suppression of Muscle Stem Cell Necroptosis Is Required for Efficient Regeneration of Dystrophic Muscles , 2020, Cell reports.
[15] J. Mackay,et al. The Nucleosome Remodeling and Deacetylase Complex Has an Asymmetric, Dynamic, and Modular Architecture , 2020, bioRxiv.
[16] J. Ledford,et al. A homozygous SFTPA1 mutation drives necroptosis of type II alveolar epithelial cells in patients with idiopathic pulmonary fibrosis , 2019, The Journal of experimental medicine.
[17] F. Lupu,et al. The NuRD chromatin-remodeling complex enzyme CHD4 prevents hypoxia-induced endothelial Ripk3 transcription and murine embryonic vascular rupture , 2019, Cell Death & Differentiation.
[18] J. Mackay,et al. The stoichiometry and interactome of the Nucleosome Remodeling and Deacetylase (NuRD) complex are conserved across multiple cell lines , 2019, The FEBS journal.
[19] Matthew C. Canver,et al. Rational targeting of a NuRD subcomplex guided by comprehensive in situ mutagenesis , 2019, Nature Genetics.
[20] M. Vermeulen,et al. The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment , 2019, The EMBO journal.
[21] F. Muntoni,et al. Necroptosis mediates myofibre death in dystrophin-deficient mice , 2018, Nature Communications.
[22] Jason D. Buenrostro,et al. Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency. , 2018, Cell stem cell.
[23] Xiaodong Wang,et al. RIP kinases as modulators of inflammation and immunity , 2018, Nature Immunology.
[24] Samira Kiani,et al. An enhanced CRISPR repressor for targeted mammalian gene regulation , 2018, Nature Methods.
[25] M. Bühler,et al. Activity-dependent neuroprotective protein recruits HP1 and CHD4 to control lineage-specifying genes , 2018, Nature.
[26] Sandy L. Klemm,et al. High-throughput chromatin accessibility profiling at single-cell resolution , 2018, bioRxiv.
[27] Junying Yuan,et al. Necroptosis promotes cell-autonomous activation of proinflammatory cytokine gene expression , 2018, Cell Death & Disease.
[28] S. Ryter,et al. RIPK3 promotes kidney fibrosis via AKT-dependent ATP citrate lyase. , 2018, JCI insight.
[29] Nicholas A. Sinnott-Armstrong,et al. An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues , 2017, Nature Methods.
[30] William T. Sherlock,et al. A Functional Switch of NuRD Chromatin Remodeling Complex Subunits Regulates Mouse Cortical Development , 2016, Cell reports.
[31] H. Stunnenberg,et al. ZMYND8 Co-localizes with NuRD on Target Genes and Regulates Poly(ADP-Ribose)-Dependent Recruitment of GATAD2A/NuRD to Sites of DNA Damage. , 2016, Cell reports.
[32] S. Friedman,et al. PAK proteins and YAP-1 signalling downstream of integrin beta-1 in myofibroblasts promote liver fibrosis , 2016, Nature Communications.
[33] Weihua Li,et al. Activation of cell-surface proteases promotes necroptosis, inflammation and cell migration , 2016, Cell Research.
[34] Wei Zhang,et al. The Nucleosome Remodeling and Deacetylase Complex NuRD Is Built from Preformed Catalytically Active Sub-modules , 2016, Journal of molecular biology.
[35] Marco Y. Hein,et al. The Perseus computational platform for comprehensive analysis of (prote)omics data , 2016, Nature Methods.
[36] R. Fässler,et al. Integrins synergise to induce expression of the MRTF-A–SRF target gene ISG15 for promoting cancer cell invasion , 2016, Journal of Cell Science.
[37] A. Thorburn,et al. Methylation-dependent loss of RIP3 expression in cancer represses programmed necrosis in response to chemotherapeutics , 2015, Cell Research.
[38] Feng Zhang,et al. Genome engineering using CRISPR-Cas9 system. , 2015, Methods in molecular biology.
[39] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[40] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[41] M. Feldmann,et al. Unraveling the signaling pathways promoting fibrosis in Dupuytren's disease reveals TNF as a therapeutic target , 2013, Proceedings of the National Academy of Sciences.
[42] Ji Luo,et al. Mixed lineage kinase domain-like is a key receptor interacting protein 3 downstream component of TNF-induced necrosis , 2012, Proceedings of the National Academy of Sciences.
[43] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[44] Xiaodong Wang,et al. Mixed Lineage Kinase Domain-like Protein Mediates Necrosis Signaling Downstream of RIP3 Kinase , 2012, Cell.
[45] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[46] A. Bradley,et al. A hyperactive piggyBac transposase for mammalian applications , 2011, Proceedings of the National Academy of Sciences.
[47] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer , 2011, Nature Biotechnology.
[48] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[49] Na Zhang,et al. RIP3, an Energy Metabolism Regulator That Switches TNF-Induced Cell Death from Apoptosis to Necrosis , 2009, Science.
[50] F. Chan,et al. Phosphorylation-Driven Assembly of the RIP1-RIP3 Complex Regulates Programmed Necrosis and Virus-Induced Inflammation , 2009, Cell.
[51] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[52] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.