Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly
暂无分享,去创建一个
Dmitry Antipov | Pavel A. Pevzner | Alexander Sirotkin | Glenn Tesler | Max A. Alekseyev | Son K. Pham
[1] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[2] C. Nusbaum,et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. , 2008, Genome research.
[3] Ankur Moitra,et al. Settling the Polynomial Learnability of Mixtures of Gaussians , 2010, 2010 IEEE 51st Annual Symposium on Foundations of Computer Science.
[4] P. Pevzner,et al. An Eulerian path approach to DNA fragment assembly , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[5] Mark J. P. Chaisson,et al. De novo fragment assembly with short mate-paired reads: Does the read length matter? , 2009, Genome research.
[6] Haixu Tang,et al. Fragment assembly with double-barreled data , 2001, ISMB.
[7] Mark J. P. Chaisson,et al. Short read fragment assembly of bacterial genomes. , 2008, Genome research.
[8] Huanming Yang,et al. De novo assembly of human genomes with massively parallel short read sequencing. , 2010, Genome research.
[9] Steven L Salzberg,et al. Detection and correction of false segmental duplications caused by genome mis-assembly , 2010, Genome Biology.
[10] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[11] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[12] R. Wilson,et al. BreakDancer: An algorithm for high resolution mapping of genomic structural variation , 2009, Nature Methods.