Automated image analysis of FRET signals for subcellular cAMP quantification.

A variety of FRET probes have been developed to examine cAMP localization and dynamics in single cells. These probes offer a readily accessible approach to measure localized cAMP signals. However, given the low signal-to-noise ratio of most FRET probes and the dynamic nature of the intracellular environment, there have been marked limitations in the ability to use FRET probes to study localized signaling events within the same cell. Here, we outline a methodology to dissect kinetics of cAMP-mediated FRET signals in single cells using automated image analysis approaches. We additionally extend these approaches to the analysis of subcellular regions. These approaches offer an unique opportunity to assess localized cAMP kinetics in an unbiased, quantitative fashion.

[1]  Silas J Leavesley,et al.  Assessing FRET using spectral techniques , 2013, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[2]  Roger Y. Tsien,et al.  Spatiotemporal dynamics of guanosine 3′,5′-cyclic monophosphate revealed by a genetically encoded, fluorescent indicator , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Prashant Prabhat,et al.  Excitation-scanning hyperspectral imaging microscope , 2014, Journal of biomedical optics.

[4]  Diego F Alvarez,et al.  Hyperspectral imaging microscopy for identification and quantitative analysis of fluorescently‐labeled cells in highly autofluorescent tissue , 2012, Journal of biophotonics.

[5]  Ullrich Köthe,et al.  Ilastik: Interactive learning and segmentation toolkit , 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[6]  B. Herman,et al.  Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy. , 1998, Biophysical journal.

[7]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[8]  Martin J. Lohse,et al.  Fluorescence Resonance Energy Transfer–Based Analysis of cAMP Dynamics in Live Neonatal Rat Cardiac Myocytes Reveals Distinct Functions of Compartmentalized Phosphodiesterases , 2004, Circulation research.

[9]  M. Lohse,et al.  FRET measurements of intracellular cAMP concentrations and cAMP analog permeability in intact cells , 2011, Nature Protocols.

[10]  Silas J Leavesley,et al.  Hyperspectral imaging of FRET-based cGMP probes. , 2013, Methods in molecular biology.

[11]  Gaudenz Danuser,et al.  FRET or no FRET: a quantitative comparison. , 2003, Biophysical journal.

[12]  R. Pepperkok,et al.  Spectral imaging and linear un‐mixing enables improved FRET efficiency with a novel GFP2–YFP FRET pair , 2002, FEBS letters.

[13]  Bartek Rajwa,et al.  Generalized unmixing model for multispectral flow cytometry utilizing nonsquare compensation matrices , 2013, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[14]  E. Krebs,et al.  Activation of protein kinase by physiological concentrations of cyclic AMP. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[15]  M. Zaccolo,et al.  Use of Chimeric Fluorescent Proteins and Fluorescence Resonance Energy Transfer to Monitor Cellular Responses , 2004, Circulation research.

[16]  Martin J. Lohse,et al.  Novel Single Chain cAMP Sensors for Receptor-induced Signal Propagation*♦ , 2004, Journal of Biological Chemistry.

[17]  Joachim Goedhart,et al.  A mTurquoise-Based cAMP Sensor for Both FLIM and Ratiometric Read-Out Has Improved Dynamic Range , 2011, PloS one.

[18]  D Zicha,et al.  Quantitative fluorescence resonance energy transfer (FRET) measurement with acceptor photobleaching and spectral unmixing , 2004, Journal of microscopy.

[19]  R. Clegg Fluorescence resonance energy transfer. , 2020, Current Opinion in Biotechnology.

[20]  Silas J. Leavesley,et al.  Tunable thin-film optical filters for hyperspectral microscopy , 2013, Photonics West - Biomedical Optics.

[21]  Anne E Carpenter,et al.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes , 2006, Genome Biology.

[22]  Stepan Gambaryan,et al.  Fluorescent sensors for rapid monitoring of intracellular cGMP , 2005, Nature Methods.

[23]  B. Zhu,et al.  Assessment of cellular mechanisms contributing to cAMP compartmentalization in pulmonary microvascular endothelial cells. , 2012, American journal of physiology. Cell physiology.

[24]  Silas J. Leavesley,et al.  Can we decipher the information content contained within cyclic nucleotide signals? , 2014, The Journal of general physiology.

[25]  Anne E Carpenter,et al.  Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell-Based Screening , 2009, PLoS Comput. Biol..

[26]  Michael W. Davidson,et al.  Monitoring protein interactions in living cells with fluorescence lifetime imaging microscopy. , 2012, Methods in Enzymology.

[27]  Kees Jalink,et al.  Detecting cAMP‐induced Epac activation by fluorescence resonance energy transfer: Epac as a novel cAMP indicator , 2004, EMBO reports.

[28]  Th. Förster Zwischenmolekulare Energiewanderung und Fluoreszenz , 1948 .