Unique and Conserved Features of Genome and Proteome of SARS-coronavirus, an Early Split-off From the Coronavirus Group 2 Lineage

[1]  A. Gorbalenya,et al.  A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae , 2003, Archives of Virology.

[2]  Alexander E Gorbalenya,et al.  Mechanisms and enzymes involved in SARS coronavirus genome expression. , 2003, The Journal of general virology.

[3]  Rolf Hilgenfeld,et al.  Coronavirus Main Proteinase (3CLpro) Structure: Basis for Design of Anti-SARS Drugs , 2003, Science.

[4]  Christian Drosten,et al.  Characterization of a Novel Coronavirus Associated with Severe Acute Respiratory Syndrome , 2003, Science.

[5]  Obi L. Griffith,et al.  The Genome Sequence of the SARS-Associated Coronavirus , 2003, Science.

[6]  Christian Drosten,et al.  Identification of a novel coronavirus in patients with severe acute respiratory syndrome. , 2003, The New England journal of medicine.

[7]  J. A. Comer,et al.  A novel coronavirus associated with severe acute respiratory syndrome. , 2003, The New England journal of medicine.

[8]  Y. Guan,et al.  Coronavirus as a possible cause of severe acute respiratory syndrome , 2003, The Lancet.

[9]  I. Bozzoni,et al.  Purification, Cloning, and Characterization of XendoU, a Novel Endoribonuclease Involved in Processing of Intron-encoded Small Nucleolar RNAs in Xenopus laevis * , 2003, The Journal of Biological Chemistry.

[10]  Jakub Pas,et al.  Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases. , 2003, Gene.

[11]  A. Sasseville,et al.  Sequence of the 3'-terminal end (8.1 kb) of the genome of porcine haemagglutinating encephalomyelitis virus: comparison with other haemagglutinating coronaviruses. , 2002, The Journal of general virology.

[12]  Jean-Louis Romette,et al.  An RNA cap (nucleoside‐2′‐O‐)‐methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization , 2002, The EMBO journal.

[13]  W. Filipowicz,et al.  Biogenesis of small nucleolar ribonucleoproteins. , 2002, Current opinion in cell biology.

[14]  P. Rottier,et al.  The Group-Specific Murine Coronavirus Genes Are Not Essential, but Their Deletion, by Reverse Genetics, Is Attenuating in the Natural Host , 2002, Virology.

[15]  K. Bienz,et al.  RNA Replication of Mouse Hepatitis Virus Takes Place at Double-Membrane Vesicles , 2002, Journal of Virology.

[16]  J. Ziebuhr,et al.  Mutational analysis of the active centre of coronavirus 3C-like proteases. , 2002, The Journal of general virology.

[17]  Benjamin A. Shoemaker,et al.  CDD: a database of conserved domain alignments with links to domain three-dimensional structure , 2002, Nucleic Acids Res..

[18]  E. Snijder,et al.  Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis , 2001, The EMBO journal.

[19]  A. Gorbalenya,et al.  Comparison of genomic and predicted amino acid sequences of respiratory and enteric bovine coronaviruses isolated from the same animal with fatal shipping pneumonia. , 2001, The Journal of general virology.

[20]  Alexander E. Gorbalenya,et al.  The Autocatalytic Release of a Putative RNA Virus Transcription Factor from Its Polyprotein Precursor Involves Two Paralogous Papain-like Proteases That Cleave the Same Peptide Bond* , 2001, The Journal of Biological Chemistry.

[21]  M. Deutscher,et al.  Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. , 2001, Nucleic acids research.

[22]  A. Gorbalenya,et al.  A zinc finger-containing papain-like protease couples subgenomic mRNA synthesis to genome translation in a positive-stranded RNA virus. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[23]  Alexander E. Gorbalenya,et al.  Big Nidovirus Genome , 2001 .

[24]  A. Gorbalenya,et al.  Big nidovirus genome. When count and order of domains matter. , 2001, Advances in experimental medicine and biology.

[25]  J. Arnold,et al.  The broad-spectrum antiviral ribonucleoside ribavirin is an RNA virus mutagen , 2000, Nature Network Boston.

[26]  B. Matthews,et al.  Structure of Escherichia coli exonuclease I suggests how processivity is achieved , 2000, Nature Structural Biology.

[27]  S. Baker,et al.  Identification of Mouse Hepatitis Virus Papain-Like Proteinase 2 Activity , 2000, Journal of Virology.

[28]  E. Fauman,et al.  RNA methylation under heat shock control. , 2000, Molecular cell.

[29]  J. Ziebuhr,et al.  The human coronavirus 229E superfamily 1 helicase has RNA and DNA duplex-unwinding activities with 5'-to-3' polarity. , 2000, RNA: A publication of the RNA Society.

[30]  A. Gorbalenya,et al.  The Predicted Metal-Binding Region of the Arterivirus Helicase Protein Is Involved in Subgenomic mRNA Synthesis, Genome Replication, and Virion Biogenesis , 2000, Journal of Virology.

[31]  W. Filipowicz,et al.  Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1",2"-cyclic phosphate. , 2000, Nucleic acids research.

[32]  J. Ziebuhr,et al.  Virus-encoded proteinases and proteolytic processing in the Nidovirales. , 2000, The Journal of general virology.

[33]  T. Jukes,et al.  The neutral theory of molecular evolution. , 2000, Genetics.

[34]  L. F. Ng,et al.  Identification of a Novel Cleavage Activity of the First Papain-Like Proteinase Domain Encoded by Open Reading Frame 1a of the Coronavirus Avian Infectious Bronchitis Virus and Characterization of the Cleavage Products , 2000, Journal of Virology.

[35]  D. Boisvert,et al.  Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution , 2000, The EMBO journal.

[36]  C. Ponting,et al.  Evolution of domain families. , 2000, Advances in protein chemistry.

[37]  J. Ziebuhr,et al.  The human coronavirus 229 E superfamily 1 helicase has RNA and DNA duplex-unwinding activities with 5 9-to-3 9 polarity , 2000 .

[38]  S. Fields,et al.  A biochemical genomics approach for identifying genes by the activity of their products. , 1999, Science.

[39]  P. Mitchell,et al.  Functions of the exosome in rRNA, snoRNA and snRNA synthesis , 1999, The EMBO journal.

[40]  S. Schleich,et al.  Localization of Mouse Hepatitis Virus Nonstructural Proteins and RNA Synthesis Indicates a Role for Late Endosomes in Viral Replication , 1999, Journal of Virology.

[41]  A. Gorbalenya,et al.  A Human RNA Viral Cysteine Proteinase That Depends upon a Unique Zn2+-binding Finger Connecting the Two Domains of a Papain-like Fold , 1999, The Journal of Biological Chemistry.

[42]  C. Stephensen,et al.  Phylogenetic analysis of a highly conserved region of the polymerase gene from 11 coronaviruses and development of a consensus polymerase chain reaction assay , 1999, Virus Research.

[43]  Burkhard Morgenstern,et al.  DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment , 1999, German Conference on Bioinformatics.

[44]  T. Steitz,et al.  Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli. , 1999, Biochemistry.

[45]  Robert D. Finn,et al.  Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins , 1999, Nucleic Acids Res..

[46]  Hong Li,et al.  tRNA Splicing* , 1998, The Journal of Biological Chemistry.

[47]  Michael Gribskov,et al.  Combining evidence using p-values: application to sequence homology searches , 1998, Bioinform..

[48]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[49]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[50]  P. D. Nagy,et al.  New insights into the mechanisms of RNA recombination. , 1997, Virology.

[51]  D. Brian,et al.  Bovine coronavirus I protein synthesis follows ribosomal scanning on the bicistronic N mRNA , 1997, Virus Research.

[52]  K. Nicholas,et al.  GeneDoc: Analysis and visualization of genetic variation , 1997 .

[53]  Roderic D. M. Page,et al.  TreeView: an application to display phylogenetic trees on personal computers , 1996, Comput. Appl. Biosci..

[54]  S. Eddy Hidden Markov models. , 1996, Current opinion in structural biology.

[55]  S. Sawicki,et al.  Coronaviruses use discontinuous extension for synthesis of subgenome-length negative strands. , 1995, Advances in experimental medicine and biology.

[56]  H. Klenk,et al.  The Coronaviridae , 1995, The Viruses.

[57]  S. Henikoff,et al.  Position-based sequence weights. , 1994, Journal of molecular biology.

[58]  W. Filipowicz,et al.  tRNA splicing in yeast and wheat germ. A cyclic phosphodiesterase implicated in the metabolism of ADP-ribose 1",2"-cyclic phosphate. , 1994, The Journal of biological chemistry.

[59]  K. Kousoulas,et al.  Biological and genetic characterization of a hemagglutinating coronavirus isolated from a diarrhoeic child , 1994, Journal of medical virology.

[60]  R. Baric,et al.  Coronaviruses , 2011, Advances in Experimental Medicine and Biology.

[61]  Marian C. Horzinek,et al.  Toroviruses: replication, evolution and comparison with other members of the coronavirus-like superfamily. , 1993, The Journal of general virology.

[62]  E. Koonin,et al.  Identification of the catalytic sites of a papain-like cysteine proteinase of murine coronavirus , 1993, Journal of virology.

[63]  D. Brian,et al.  Leader-mRNA Junction Sequences Are Unique for Each Subgenomic mRNA Species in the Bovine Coronavirus and Remain So Throughout Persistent Infection , 1993, Virology.

[64]  S. Inglis,et al.  Internal entry of ribosomes on a tricistronic mRNA encoded by infectious bronchitis virus , 1992, Journal of virology.

[65]  Eugene V. Koonin,et al.  Putative papain‐related thiol proteases of positive‐strand RNA viruses Identification of rubi‐ and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi‐, α‐ and coronaviruses , 1991, FEBS Letters.

[66]  J. D. den Boon,et al.  Another triple-spanning envelope protein among intracellularly budding RNA viruses: The torovirus E protein , 1991, Virology.

[67]  J. D. den Boon,et al.  Equine arteritis virus is not a togavirus but belongs to the coronaviruslike superfamily , 1991, Journal of virology.

[68]  J. D. den Boon,et al.  Comparison of the genome organization of toro- and coronaviruses: Evidence for two nonhomologous RNA recombination events during berne virus evolution , 1991, Virology.

[69]  J. D. den Boon,et al.  Primary structure and post-translational processing of the berne virus peplomer protein☆ , 1990, Virology.

[70]  J. D. den Boon,et al.  The carboxyl-terminal part of the putative Berne virus polymerase is expressed by ribosomal frameshifting and contains sequence motifs which indicate that toro- and coronaviruses are evolutionarily related. , 1990, Nucleic acids research.

[71]  Marian C. Horzinek,et al.  Identification and stability of a 30-kDa nonstructural protein encoded by mRNA 2 of mouse hepatitis virus in infected cells , 1990, Virology.

[72]  F. Gebauer,et al.  Antigenic homology among coronaviruses related to transmissible gastroenteritis virus , 1990, Virology.

[73]  L. Blanco,et al.  A conserved 3′→5′ exonuclease active site in prokaryotic and eukaryotic DNA polymerases , 1989, Cell.

[74]  D. Brian,et al.  Coronavirus subgenomic minus-strand RNAs and the potential for mRNA replicons. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[75]  V. Blinov,et al.  Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis. , 1989, Nucleic acids research.

[76]  I. Brierley,et al.  Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot , 1989, Cell.

[77]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[78]  T. Brown,et al.  Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus. , 1987, The Journal of general virology.