Cross-linking, ligation, and sequencing of hybrids reveals RNA–RNA interactions in yeast
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David Tollervey | Sander Granneman | D. Tollervey | Grzegorz Kudla | J. Beggs | S. Granneman | D. Hahn | Grzegorz Kudla | Jean D Beggs | Daniela Hahn
[1] C. Guthrie,et al. Spliceosomal snRNAs. , 1988, Annual review of genetics.
[2] Dmitry A. Samarsky,et al. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae , 1999, Nucleic Acids Res..
[3] M. Fournier,et al. Functional Mapping of the U3 Small Nucleolar RNA from the Yeast Saccharomyces cerevisiae , 1998, Molecular and Cellular Biology.
[4] S. Baserga,et al. Imp3p and Imp4p, Two Specific Components of the U3 Small Nucleolar Ribonucleoprotein That Are Essential for Pre-18S rRNA Processing , 1999, Molecular and Cellular Biology.
[5] Christine Guthrie,et al. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA , 1987, Cell.
[6] D. Tollervey,et al. Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs , 1988, Molecular and cellular biology.
[7] David Tollervey,et al. Base Pairing between U3 Small Nucleolar RNA and the 5′ End of 18S rRNA Is Required for Pre-rRNA Processing , 1999, Molecular and Cellular Biology.
[8] C. Guthrie,et al. Human U2 snRNA can function in pre-mRNA splicing in yeast , 1990, Nature.
[9] G. Cesareni,et al. The yeast homologue of U3 snRNA. , 1987, The EMBO journal.
[10] J. Dekker,et al. Capturing Chromosome Conformation , 2002, Science.
[11] David Tollervey,et al. Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs , 2009, Proceedings of the National Academy of Sciences.
[12] S. Eddy,et al. A computational screen for methylation guide snoRNAs in yeast. , 1999, Science.
[13] M. Ares. U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs , 1986, Cell.
[14] Michael Zuker,et al. DINAMelt web server for nucleic acid melting prediction , 2005, Nucleic Acids Res..
[15] C. Guthrie,et al. Two conserved domains of yeast U2 snRNA are separated by 945 nonessential nucleotides , 1988, Cell.
[16] C. Guthrie,et al. Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant , 1988, Molecular and cellular biology.
[17] R. Lührmann,et al. An in vivo and in vitro structure-function analysis of the Saccharomyces cerevisiae U3A snoRNP: protein-RNA contacts and base-pair interaction with the pre-ribosomal RNA. , 1997, Journal of molecular biology.
[18] K. Weeks,et al. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). , 2005, Journal of the American Chemical Society.
[19] M. Fournier,et al. The U1 snRNA hairpin II as a RNA affinity tag for selecting snoRNP complexes. , 2007, Methods in enzymology.
[20] J. Staley,et al. Multiple functions for the invariant AGC triad of U6 snRNA. , 2004, RNA.
[21] T. Kiss. Small Nucleolar RNAs An Abundant Group of Noncoding RNAs with Diverse Cellular Functions , 2002, Cell.
[22] S. Baserga,et al. Mpp10p, a new protein component of the U3 snoRNP required for processing of 18S rRNA precursors. , 1997, Nucleic acids symposium series.
[23] J. Beggs,et al. Brr2p RNA helicase with a split personality: insights into structure and function. , 2010, Biochemical Society transactions.
[24] D. Scherly,et al. Major determinants of the specificity of interaction between small nuclear ribonucleoproteins U1A and U2B" and their cognate RNAs , 1990, Nature.
[25] M. Ares,et al. Internal sequences that distinguish yeast from metazoan U2 snRNA are unnecessary for pre-mRNA splicing , 1988, Nature.
[26] D. Tollervey,et al. Base pairing between U3 and the pre‐ribosomal RNA is required for 18S rRNA synthesis. , 1995, The EMBO journal.
[27] David Tollervey,et al. Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis , 2009, Molecular cell.
[28] D. Tollervey,et al. Function and synthesis of small nucleolar RNAs. , 1997, Current opinion in cell biology.
[29] D. Haussler,et al. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing , 2010, Nature Methods.
[30] Donny D. Licatalosi,et al. RNA processing and its regulation: global insights into biological networks , 2010, Nature Reviews Genetics.
[31] J. Beggs,et al. Prp8p dissection reveals domain structure and protein interaction sites. , 2005, RNA.
[32] Xin Li,et al. Short Homologous Sequences Are Strongly Associated with the Generation of Chimeric RNAs in Eukaryotes , 2008, Journal of Molecular Evolution.
[33] Leon D. Segal,et al. Functions , 1995 .
[34] S. Baserga,et al. An unexpected, conserved element of the U3 snoRNA is required for Mpp10p association. , 2001, RNA.
[35] J. Hughes,et al. Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA. , 1996, Journal of molecular biology.
[36] Howard Y. Chang,et al. Genome-wide measurement of RNA secondary structure in yeast , 2010, Nature.
[37] Tamás Kiss,et al. Site-Specific Ribose Methylation of Preribosomal RNA: A Novel Function for Small Nucleolar RNAs , 1996, Cell.
[38] David Tollervey,et al. Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro , 2010, PloS one.