Structural proteomics of dengue virus.

In this paper, we discuss recent advances in our knowledge of the dengue virus life cycle based on new structural data of the virus and its proteins. Specifically, we focus on the structure of the pre-membrane protein, prM and its role in virus assembly, the first full-length structure of a multi-domain dengue virus replication protein, NS3, and the recently solved structures of NS5 methyltransferase and polymerase domains. These structures provide a basis for describing function and predicting putative host interactions.

[1]  M. Ramanathan,et al.  Host cell killing by the West Nile Virus NS2B-NS3 proteolytic complex: NS3 alone is sufficient to recruit caspase-8-based apoptotic pathway. , 2006, Virology.

[2]  Subhash G. Vasudevan,et al.  Crystal Structure of the Dengue Virus RNA-Dependent RNA Polymerase Catalytic Domain at 1.85-Angstrom Resolution , 2007, Journal of Virology.

[3]  J. Lepault,et al.  Dengue Virus Type 1 Nonstructural Glycoprotein NS1 Is Secreted from Mammalian Cells as a Soluble Hexamer in a Glycosylation-Dependent Fashion , 1999, Journal of Virology.

[4]  J. Mackenzie,et al.  Regulated Cleavages at the West Nile Virus NS4A-2K-NS4B Junctions Play a Major Role in Rearranging Cytoplasmic Membranes and Golgi Trafficking of the NS4A Protein , 2006, Journal of Virology.

[5]  Y. Modis,et al.  Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type 3 Envelope Glycoprotein , 2005, Journal of Virology.

[6]  C. Rice,et al.  trans-Complementation of yellow fever virus NS1 reveals a role in early RNA replication , 1997, Journal of virology.

[7]  Zheng Yin,et al.  Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus , 2006, Nature Structural &Molecular Biology.

[8]  V. Stollar,et al.  Newly synthesized dengue-2 virus nonstructural protein NS1 is a soluble protein but becomes partially hydrophobic and membrane-associated after dimerization. , 1989, Virology.

[9]  S. Vasudevan,et al.  Crystal structure of the NS3 protease-helicase from dengue virus , 2008 .

[10]  S. Vasudevan,et al.  A small region of the dengue virus-encoded RNA-dependent RNA polymerase, NS5, confers interaction with both the nuclear transport receptor importin-beta and the viral helicase, NS3. , 2001, The Journal of general virology.

[11]  R. Bartenschlager,et al.  Subcellular Localization and Membrane Topology of the Dengue Virus Type 2 Non-structural Protein 4B* , 2006, Journal of Biological Chemistry.

[12]  J. Mackenzie,et al.  Nascent flavivirus RNA colocalized in situ with double-stranded RNA in stable replication complexes. , 1999, Virology.

[13]  Y. Modis,et al.  Structure of the dengue virus envelope protein after membrane fusion , 2004, Nature.

[14]  T. Tsukihara,et al.  Crystal structure of the catalytic domain of Japanese encephalitis virus NS3 helicase/nucleoside triphosphatase at a resolution of 1.8 A. , 2008, Virology.

[15]  R. Kuhn,et al.  Yellow Fever Virus NS3 Plays an Essential Role in Virus Assembly Independent of Its Known Enzymatic Functions , 2008, Journal of Virology.

[16]  B. Falgout,et al.  Evidence that flavivirus NS1-NS2A cleavage is mediated by a membrane-bound host protease in the endoplasmic reticulum , 1995, Journal of virology.

[17]  S. Vasudevan,et al.  Nuclear localization of dengue virus nonstructural protein 5 through its importin alpha/beta-recognized nuclear localization sequences is integral to viral infection. , 2007, Traffic.

[18]  Eugene V. Koonin,et al.  Helicases: amino acid sequence comparisons and structure-function relationships , 1993 .

[19]  R. Kuhn,et al.  Functional Characterization of cis and trans Activity of the Flavivirus NS2B-NS3 Protease* , 2007, Journal of Biological Chemistry.

[20]  A. Fauci,et al.  Dengue and hemorrhagic fever: a potential threat to public health in the United States. , 2008, JAMA.

[21]  Clemens Vonrhein,et al.  Crystal Structure of the RNA Polymerase Domain of the West Nile Virus Non-structural Protein 5* , 2007, Journal of Biological Chemistry.

[22]  M. Rossmann,et al.  A structural perspective of the flavivirus life cycle , 2005, Nature Reviews Microbiology.

[23]  Yi Guo,et al.  West Nile Virus 5′-Cap Structure Is Formed by Sequential Guanine N-7 and Ribose 2′-O Methylations by Nonstructural Protein 5 , 2006, Journal of Virology.

[24]  Nicholas H. Acheson Fundamentals of Molecular Virology , 2006 .

[25]  Charles M. Rice,et al.  Mutations in the Yellow Fever Virus Nonstructural Protein NS2A Selectively Block Production of Infectious Particles , 2002, Journal of Virology.

[26]  H. Agaisse,et al.  Rab 5 Is Required for the Cellular Entry of Dengue and West Nile Viruses , 2007, Journal of Virology.

[27]  J. Muñoz-Jordán,et al.  Inhibition of Alpha/Beta Interferon Signaling by the NS4B Protein of Flaviviruses , 2005, Journal of Virology.

[28]  Subhash G. Vasudevan,et al.  Structure of the Dengue Virus Helicase/Nucleoside Triphosphatase Catalytic Domain at a Resolution of 2.4 Å , 2005, Journal of Virology.

[29]  Tianbing Ding,et al.  Does Japanese encephalitis virus share the same cellular receptor with other mosquito-borne flaviviruses on the C6/36 mosquito cells? , 2007, Virology Journal.

[30]  Alex Y Strongin,et al.  Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold , 2007, Protein science : a publication of the Protein Society.

[31]  E. Holmes,et al.  A single positively selected West Nile viral mutation confers increased virogenesis in American crows , 2007, Nature Genetics.

[32]  C. Rice,et al.  Yellow fever virus proteins NS2A, NS2B, and NS4B: identification and partial N-terminal amino acid sequence analysis. , 1989, Virology.

[33]  M. Ramachandra,et al.  Association between NS3 and NS5 Proteins of Dengue Virus Type 2 in the Putative RNA Replicase Is Linked to Differential Phosphorylation of NS5 (*) , 1995, The Journal of Biological Chemistry.

[34]  Wei Zhang,et al.  Structure of the Immature Dengue Virus at Low pH Primes Proteolytic Maturation , 2008, Science.

[35]  R. Dwek,et al.  The Mannose Receptor Mediates Dengue Virus Infection of Macrophages , 2008, PLoS pathogens.

[36]  J. Mackenzie,et al.  Markers for trans-Golgi Membranes and the Intermediate Compartment Localize to Induced Membranes with Distinct Replication Functions in Flavivirus-Infected Cells , 1999, Journal of Virology.

[37]  S. Vasudevan,et al.  Nuclear Localization of Dengue Virus Nonstructural Protein 5 Through Its Importin α/β–Recognized Nuclear Localization Sequences is Integral to Viral Infection , 2007, Traffic.

[38]  Nuria Verdaguer,et al.  A comparison of viral RNA-dependent RNA polymerases. , 2006, Current opinion in structural biology.

[39]  Ying Zhang,et al.  Visualization of membrane protein domains by cryo-electron microscopy of dengue virus , 2003, Nature Structural Biology.

[40]  J. Schlesinger,et al.  Cell surface expression of yellow fever virus non-structural glycoprotein NS1: consequences of interaction with antibody. , 1990, The Journal of general virology.

[41]  R. Steinman,et al.  DC-SIGN (CD209) Mediates Dengue Virus Infection of Human Dendritic Cells , 2003, The Journal of experimental medicine.

[42]  C. Lai,et al.  Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins , 1991, Journal of virology.

[43]  P. Desprès,et al.  Dendritic‐cell‐specific ICAM3‐grabbing non‐integrin is essential for the productive infection of human dendritic cells by mosquito‐cell‐derived dengue viruses , 2003, EMBO reports.

[44]  Carol Beth Post,et al.  Solution structure of dengue virus capsid protein reveals another fold. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Wei Zhang,et al.  Structure of Dengue Virus Implications for Flavivirus Organization, Maturation, and Fusion , 2002, Cell.

[46]  Timothy S Baker,et al.  Conformational changes of the flavivirus E glycoprotein. , 2004, Structure.

[47]  K E Ebner,et al.  Cotranslational Membrane Insertion of the Serine Proteinase Precursor NS2B-NS3(Pro) of Dengue Virus Type 2 Is Required for Efficient in Vitro Processing and Is Mediated through the Hydrophobic Regions of NS2B* , 1997, The Journal of Biological Chemistry.

[48]  C. Rice,et al.  Production of yellow fever virus proteins in infected cells: identification of discrete polyprotein species and analysis of cleavage kinetics using region-specific polyclonal antisera. , 1990, Virology.

[49]  S. Vasudevan,et al.  The Interdomain Region of Dengue NS5 Protein That Binds to the Viral Helicase NS3 Contains Independently Functional Importin β1 and Importin α/β-Recognized Nuclear Localization Signals* , 2002, The Journal of Biological Chemistry.

[50]  Ying Zhang,et al.  Structures of immature flavivirus particles , 2003, The EMBO journal.

[51]  Jeffrey W. Smith,et al.  Switching the Substrate Specificity of the Two-Component NS2B-NS3 Flavivirus Proteinase by Structure-Based Mutagenesis , 2007, Journal of Virology.

[52]  Ralf Bartenschlager,et al.  The Non-structural Protein 4A of Dengue Virus Is an Integral Membrane Protein Inducing Membrane Alterations in a 2K-regulated Manner* , 2007, Journal of Biological Chemistry.

[53]  G. Nybakken,et al.  Antibodies against West Nile Virus Nonstructural Protein NS1 Prevent Lethal Infection through Fc γ Receptor-Dependent and -Independent Mechanisms , 2006, Journal of Virology.

[54]  Yi Guo,et al.  Structure and Function of Flavivirus NS5 Methyltransferase , 2007, Journal of Virology.

[55]  T. Solomon,et al.  Pathogenic flaviviruses , 2008, The Lancet.

[56]  J P Griffith,et al.  Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. , 1998, Structure.

[57]  Shao-Hung Wang,et al.  Activation of dengue protease autocleavage at the NS2B-NS3 junction by recombinant NS3 and GST-NS2B fusion proteins. , 2003, Journal of virological methods.

[58]  Adolfo García-Sastre,et al.  Inhibition of interferon signaling by dengue virus , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[59]  Y. Modis,et al.  A ligand-binding pocket in the dengue virus envelope glycoprotein , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[60]  D. Smith,et al.  Identification of GRP 78 (BiP) as a liver cell expressed receptor element for dengue virus serotype 2 , 2004, Archives of Virology.

[61]  P. Mason Maturation of Japanese encephalitis virus glycoproteins produced by infected mammalian and mosquito cells , 1989, Virology.

[62]  C. Rice,et al.  Mutagenesis of the yellow fever virus NS2B protein: effects on proteolytic processing, NS2B-NS3 complex formation, and viral replication , 1993, Journal of virology.

[63]  Jean-Louis Romette,et al.  An RNA cap (nucleoside‐2′‐O‐)‐methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization , 2002, The EMBO journal.

[64]  C. Rice,et al.  Genetic Interaction of Flavivirus Nonstructural Proteins NS1 and NS4A as a Determinant of Replicase Function , 1999, Journal of Virology.

[65]  Ying Zhang,et al.  The Flavivirus Precursor Membrane-Envelope Protein Complex: Structure and Maturation , 2008, Science.

[66]  A. Kanjanahaluethai,et al.  Characterization of dengue virus NS1 stably expressed in 293T cell lines. , 2007, Journal of virological methods.

[67]  A. Sampath,et al.  Dengue virus NS4B interacts with NS3 and dissociates it from single-stranded RNA. , 2006, The Journal of general virology.

[68]  Richard J. Kuhn,et al.  Structure of the Flavivirus Helicase: Implications for Catalytic Activity, Protein Interactions, and Proteolytic Processing , 2005, Journal of Virology.

[69]  A. Kwong,et al.  Structure of the hepatitis C virus RNA helicase domain , 1997, Nature Structural Biology.

[70]  M. Rossmann,et al.  Cryo-EM Reconstruction of Dengue Virus in Complex with the Carbohydrate Recognition Domain of DC-SIGN , 2006, Cell.