An optimized algorithm for detecting and annotating regional differential methylation
暂无分享,去创建一个
Sheng Li | Francine E. Garrett-Bakelman | Altuna Akalin | Paul Zumbo | Ross Levine | Bik L. To | Ian D. Lewis | Anna L. Brown | Richard J. D'Andrea | Ari Melnick | Christopher E. Mason | C. Mason | Sheng Li | Paul Zumbo | A. Melnick | A. Akalin | R. Levine | R. D'Andrea | I. Lewis | B. To | P. Zumbo | Richard J. D'Andrea | Ian D. Lewis | Ari Melnick | Sheng Li | Altuna Akalin | Ross Levine | Bik L. To | Anna L. Brown | Christopher E. Mason
[1] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[2] Brent S. Pedersen,et al. Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values , 2012, Bioinform..
[3] Zachary D. Smith,et al. Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling , 2012, Genome Biology.
[4] Francine E. Garrett-Bakelman,et al. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles , 2012, Genome Biology.
[5] Francine E. Garrett-Bakelman,et al. Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia , 2012, PLoS genetics.
[6] Zachary D. Smith,et al. Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling , 2011, Nature Protocols.
[7] L. Gordon,et al. Patterns of Use of FDG-PET for the Initial Staging of Follicular Lymphoma (FL) and Its Impact on Initial Treatment Strategy and Outcomes In the National Comprehensive Cancer Network (NCCN) Lymphoma Database , 2010 .
[8] O. Elemento,et al. DNA methylation signatures define molecular subtypes of diffuse large B-cell lymphoma. , 2010, Blood.
[9] Michael Q. Zhang,et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications , 2010, Nature Biotechnology.
[10] P. Collas,et al. Lineage-specific promoter DNA methylation patterns segregate adult progenitor cell types. , 2010, Stem cells and development.
[11] Pedro M. Valero-Mora,et al. ggplot2: Elegant Graphics for Data Analysis , 2010 .
[12] C. Allis,et al. Covalent histone modifications — miswritten, misinterpreted and mis-erased in human cancers , 2010, Nature Reviews Cancer.
[13] M. Nelson,et al. Quantitative DNA methylation predicts survival in adult acute myeloid leukemia. , 2010, Blood.
[14] Fabien Campagne,et al. DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia. , 2010, Cancer cell.
[15] Zachary D. Smith,et al. Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution , 2010, Nature Methods.
[16] David Serre,et al. MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome , 2009, Nucleic acids research.
[17] Brian Biehs,et al. Statistical Applications in Genetics and Molecular Biology Generalizing Moving Averages for Tiling Arrays Using Combined P-Value Statistics , 2011 .
[18] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[19] D. Hunter,et al. mixtools: An R Package for Analyzing Mixture Models , 2009 .
[20] Madeleine P. Ball,et al. Corrigendum: Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells , 2009, Nature Biotechnology.
[21] S. Nelson,et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning , 2008, Nature.
[22] Esteban Ballestar,et al. Methyl-DNA immunoprecipitation (MeDIP): hunting down the DNA methylome. , 2008, BioTechniques.
[23] A. Feinberg. Phenotypic plasticity and the epigenetics of human disease , 2007, Nature.
[24] A. Gnirke,et al. Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis , 2005, Nucleic acids research.
[25] W. Lam,et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells , 2005, Nature Genetics.
[26] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[27] Y. Benjamini,et al. Controlling the false discovery rate in behavior genetics research , 2001, Behavioural Brain Research.
[28] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[29] Monica Nordberg,et al. Pharmacology , 1941, The Indian Medical Gazette.