Using whole-genome sequencing data to derive the homologous recombination deficiency scores
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J. Pearson | S. Lakhani | N. Waddell | K. Nones | O. Holmes | S. Kazakoff | C. Leonard | F. Newell | S. Wood | Qinying Xu | P. Simpson | A. M. McCart Reed | G. Hartel | X. D. de Luca
[1] J. Pearson,et al. Using whole-genome sequencing data to derive the homologous recombination deficiency scores , 2020, npj Breast Cancer.
[2] J. Pearson,et al. Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers , 2019, Annals of oncology : official journal of the European Society for Medical Oncology.
[3] E. Birney,et al. Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences , 2019, Nature.
[4] Nicolai J. Birkbak,et al. Migrating the SNP array-based homologous recombination deficiency measures to next generation sequencing data of breast cancer , 2018, npj Breast Cancer.
[5] Z. Szallasi,et al. Breast cancer brain metastases show increased levels of genomic aberration-based homologous recombination deficiency scores relative to their corresponding primary tumors , 2018, bioRxiv.
[6] Nancy R. Zhang,et al. BRCA locus-specific loss of heterozygosity in germline BRCA1 and BRCA2 carriers , 2017, Nature Communications.
[7] J. Reis-Filho,et al. Bi‐allelic alterations in DNA repair genes underpin homologous recombination DNA repair defects in breast cancer , 2017, The Journal of pathology.
[8] Nicholas J Monteleone,et al. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data , 2017, BMC Bioinformatics.
[9] E. Birney,et al. HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures , 2017, Nature Medicine.
[10] Andrew Menzies,et al. ascatNgs: Identifying Somatically Acquired Copy‐Number Alterations from Whole‐Genome Sequencing Data , 2016, Current protocols in bioinformatics.
[11] Ignace Vergote,et al. Niraparib Maintenance Therapy in Platinum-Sensitive, Recurrent Ovarian Cancer. , 2016, The New England journal of medicine.
[12] L. Pusztai,et al. Intratumor Heterogeneity of Homologous Recombination Deficiency in Primary Breast Cancer , 2016, Clinical Cancer Research.
[13] Terry K Koo,et al. A Guideline of Selecting and Reporting Intraclass Correlation Coefficients for Reliability Research. , 2016, Journal Chiropractic Medicine.
[14] David C. Jones,et al. Landscape of somatic mutations in 560 breast cancer whole genome sequences , 2016, Nature.
[15] Z. Szallasi,et al. Homologous Recombination Deficiency (HRD) Score Predicts Response to Platinum-Containing Neoadjuvant Chemotherapy in Patients with Triple-Negative Breast Cancer , 2016, Clinical Cancer Research.
[16] D. Giavarina. Understanding Bland Altman analysis , 2015, Biochemia medica.
[17] Nicolai J. Birkbak,et al. Pan-cancer analysis of genomic scar signatures associated with homologous recombination deficiency suggests novel indications for existing cancer drugs , 2015, Biomarker Research.
[18] Z. Szallasi,et al. Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data , 2014, Annals of oncology : official journal of the European Society for Medical Oncology.
[19] Lei Shang,et al. Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants , 2014, Proceedings of the National Academy of Sciences.
[20] Alison M. Meynert,et al. Variant detection sensitivity and biases in whole genome and exome sequencing , 2014, BMC Bioinformatics.
[21] Xiaolin Zhu,et al. An Evaluation of Copy Number Variation Detection Tools from Whole‐Exome Sequencing Data , 2014, Human mutation.
[22] C. Ponting,et al. Sequencing depth and coverage: key considerations in genomic analyses , 2014, Nature Reviews Genetics.
[23] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[24] A. Vincent-Salomon,et al. Ploidy and large-scale genomic instability consistently identify basal-like breast carcinomas with BRCA1/2 inactivation. , 2012, Cancer research.
[25] G. Mills,et al. Patterns of genomic loss of heterozygosity predict homologous recombination repair defects in epithelial ovarian cancer , 2012, British Journal of Cancer.
[26] E. Banks,et al. Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth. , 2012, American journal of human genetics.
[27] Z. Szallasi,et al. Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents. , 2012, Cancer discovery.
[28] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[29] C. Perou,et al. Allele-specific copy number analysis of tumors , 2010, Proceedings of the National Academy of Sciences.
[30] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[31] D. Altman,et al. STATISTICAL METHODS FOR ASSESSING AGREEMENT BETWEEN TWO METHODS OF CLINICAL MEASUREMENT , 1986, The Lancet.
[32] J. Fleiss. Measuring nominal scale agreement among many raters. , 1971 .