Bayesian Spatial Point Process Modeling of Line Transect Data

This paper develops a Bayesian approach for spatial inference on animal density from line transect survey data. We model the spatial distribution of animals within a geographical area of interest by an inhomogeneous Poisson process whose intensity function incorporates both covariate effects and spatial smoothing of residual variation. Independently thinning the animal locations according to their estimated detection probabilities results into another spatial Poisson process for the sightings (the observations). Prior distributions are elicited for all unknown model parameters. Due to the sparsity of data in the application we consider, eliciting sensible prior distributions is important in order to get meaningful estimation results. A reversible jump Markov Chain Monte Carlo (MCMC) algorithm for simulation of the posterior distribution is developed. We present results for simulated data and a real data set of minke whale pods from Antarctic waters. The main advantages of our method compared to design-based analyses are that it can use data arising from sources other than specifically designed surveys and its ability to link covariate effects to variation of animal density. The Bayesian paradigm provides a coherent framework for quantifying uncertainty in estimation results.

[1]  W. Wong,et al.  The calculation of posterior distributions by data augmentation , 1987 .

[2]  J. Symanzik Statistical Analysis of Spatial Point Patterns (2nd ed.) , 2005 .

[3]  H. Skaug Markov Modulated Poisson Processes for Clustered Line Transect Data , 2006, Environmental and Ecological Statistics.

[4]  Stephen T. Buckland,et al.  Spatial models for line transect sampling , 2004 .

[5]  Sharon L. Hedley,et al.  Modeling distribution and abundance of Antarctic baleen whales using ships of opportunity , 2006 .

[6]  John P. Snyder,et al.  Map Projections: A Working Manual , 2012 .

[7]  D. V. van Dyk,et al.  Partially Collapsed Gibbs Samplers , 2008 .

[8]  J. Barra,et al.  Recent Developments in Statistics , 1978 .

[9]  P. Green Reversible jump Markov chain Monte Carlo computation and Bayesian model determination , 1995 .

[10]  Marit Holden,et al.  Comment on Cowling's "Spatial methods for line transect surveys". , 2003, Biometrics.

[11]  David R. Anderson,et al.  Advanced distance sampling , 2004 .

[12]  J. Heikkinen,et al.  Non‐parametric Bayesian Estimation of a Spatial Poisson Intensity , 1998 .

[13]  J. Møller,et al.  Log Gaussian Cox Processes , 1998 .

[14]  D. Stoyan,et al.  Stochastic Geometry and Its Applications , 1989 .

[15]  Peter J. Diggle,et al.  Statistical analysis of spatial point patterns , 1983 .

[16]  R. Wolpert,et al.  Poisson/gamma random field models for spatial statistics , 1998 .

[17]  Andrew B. Lawson,et al.  Spatial cluster modelling , 2002 .

[18]  Tore Schweder,et al.  Likelihood-based inference for clustered line transect data , 2006 .

[19]  Tore Schweder,et al.  Point clustering of minke whales in the northeastern Atlantic , 1995 .

[20]  R. Wolpert,et al.  Spatial Regression for Marked Point Processes , 2008 .

[21]  Ann Cowling,et al.  Spatial methods for line transect surveys , 1998 .

[22]  Sylvia Richardson,et al.  Markov Chain Monte Carlo in Practice , 1997 .