RATIONALIZATION OF THE DIELECTRIC PROPERTIES OF COMMON THREE-SITE WATER MODELS IN TERMS OF THEIR FORCE FIELD PARAMETERS
暂无分享,去创建一个
Stefan Boresch | Othmar Steinhauser | O. Steinhauser | P. Höchtl | S. Boresch | Wolfgang Bitomsky | Wolfgang Bitomsky | Peter Höchtl | Peter Höchtl
[1] H. Berendsen,et al. Molecular dynamics with coupling to an external bath , 1984 .
[2] J. A. Barker,et al. Structure of water; A Monte Carlo calculation , 1969 .
[3] S. Yip,et al. Molecular dynamics simulation of dielectric properties of water , 1987 .
[4] Alan E. Mark,et al. Computer simulation of protein motion , 1995 .
[5] D. J. Adams,et al. Taming the Edwald sum in the computer simulation of charged systems , 1987 .
[6] O. Steinhauser,et al. On the calculation of the dielectric constant using the Ewald-Kornfeld tensor , 1983 .
[7] M. Berkowitz,et al. The dielectric constant of SPC/E water , 1989 .
[8] D. D. Yue,et al. Theory of Electric Polarization , 1974 .
[9] P. Kollman,et al. Molecular dynamics free energy simulations: Influence of the truncation of long‐range nonbonded electrostatic interactions on free energy calculations of polar molecules , 1994 .
[10] Frank H. Stillinger,et al. Revised central force potentials for water , 1978 .
[11] A T Brünger,et al. Microscopic theory of the dielectric properties of proteins. , 1991, Biophysical journal.
[12] Alan E. Mark,et al. Dielectric properties of trypsin inhibitor and lysozyme calculated from molecular dynamics simulations , 1993 .
[13] J. Kirkwood. The Dielectric Polarization of Polar Liquids , 1939 .
[14] T. Straatsma,et al. THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS , 1987 .
[15] Stefan Boresch,et al. Presumed versus real artifacts of the Ewald summation technique: The importance of dielectric boundary conditions , 1997 .
[16] W. L. Jorgensen. Quantum and statistical mechanical studies of liquids. 10. Transferable intermolecular potential functions for water, alcohols, and ethers. Application to liquid water , 2002 .
[17] F. Stillinger,et al. Molecular Dynamics Study of Liquid Water , 1971 .
[18] G. Ciccotti,et al. Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes , 1977 .
[19] O. Matsuoka,et al. CI study of the water dimer potential surface , 1976 .
[20] D. Pérahia,et al. Internal and interfacial dielectric properties of cytochrome c from molecular dynamics in aqueous solution. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[21] P. Kollman,et al. Structure and Properties of Neat Liquids Using Nonadditive Molecular Dynamics: Water, Methanol, and N-Methylacetamide , 1995 .
[22] B. Honig,et al. Classical electrostatics in biology and chemistry. , 1995, Science.
[23] F. Stillinger,et al. Improved simulation of liquid water by molecular dynamics , 1974 .
[24] A. D. Buckingham. Angular correlation in liquids , 1967 .
[25] P. Kollman,et al. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules , 1995 .
[26] R. C. Weast. Handbook of chemistry and physics , 1973 .
[27] Arieh Warshel,et al. Microscopic simulations of macroscopic dielectric constants of solvated proteins , 1991 .
[28] P. Kollman,et al. Advancing beyond the atom‐centered model in additive and nonadditive molecular mechanics , 1997 .
[29] R. Cole,et al. Dielectric Properties of Ice and Solid D2O , 1952 .
[30] Alexander D. MacKerell,et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.
[31] J. Hermans,et al. The Dielectric Properties of Simulated Water Droplets , 1996 .
[32] Richard N. Zare,et al. Angular Momentum: Understanding Spatial Aspects in Chemistry and Physics , 1988 .
[33] Walter Kauzmann,et al. The Structure and Properties of Water , 1969 .
[34] A. Kuznetsov,et al. Electrostatics of proteins: Description in terms of two dielectric constants simultaneously , 1997, Proteins.
[35] Thomas Simonson,et al. Accurate calculation of the dielectric constant of water from simulations of a microscopic droplet in vacuum , 1996 .
[36] D. Davidson,et al. Dielectric Properties of Ice VII. Ice VIII: A New Phase of Ice , 1966 .
[37] Thomas Simonson,et al. Microscopic Dielectric Properties of Cytochrome c from Molecular Dynamics Simulations in Aqueous Solution , 1995 .
[38] K. Heinzinger,et al. An improved potential for non-rigid water molecules in the liquid phase , 1983 .
[39] Anders Wallqvist,et al. Effective potentials for liquid water using polarizable and nonpolarizable models , 1993 .
[40] O. Steinhauser,et al. Invariant expansion coefficients of the molecular pair correlation function of ZX4‐systems , 1981 .
[41] O. Steinhauser,et al. Calculation of the dielectric properties of a protein and its solvent: theory and a case study. , 1997, Journal of molecular biology.
[42] T. Darden,et al. A smooth particle mesh Ewald method , 1995 .
[43] D. Chandler,et al. Calculation of orientational pair correlation factors with the interaction site formalism , 1984 .
[44] J. Banavar,et al. Computer Simulation of Liquids , 1988 .
[45] G. Karlstroem,et al. New intermolecular energy calculation scheme: applications to potential surface and liquid properties of water , 1990 .
[46] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[47] J. A. Barker,et al. Monte Carlo studies of the dielectric properties of water-like models , 1973 .
[48] H. Berendsen,et al. ALGORITHMS FOR MACROMOLECULAR DYNAMICS AND CONSTRAINT DYNAMICS , 1977 .
[49] T. Darden,et al. Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .
[50] Felix Franks,et al. Water:A Comprehensive Treatise , 1972 .
[51] Anders Wallqvist,et al. A molecular dynamics study of polarizable water , 1989 .
[52] O. Steinhauser,et al. On the calculation of the frequency-dependent dielectric constant in computer simulations , 1983 .
[53] Michiel Sprik,et al. Hydrogen bonding and the static dielectric constant in liquid water , 1991 .
[54] Ronald M. Levy,et al. Molecular dynamics simulations of water with Ewald summation for the long range electrostatic interactions , 1991 .
[55] J. Perram,et al. Simulation of electrostatic systems in periodic boundary conditions. I. Lattice sums and dielectric constants , 1980, Proceedings of the Royal Society of London. A. Mathematical and Physical Sciences.
[56] O. Steinhauser. On the Orientational Structure and Dielectric Properties of Water. A Comparison of ST2 and MCY Potential , 1983 .
[57] M. Karplus,et al. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .
[58] Michael L. Klein,et al. Effective pair potentials and the properties of water , 1989 .
[59] M. Karplus,et al. Simulation of activation free energies in molecular systems , 1996 .
[60] J. W. Perram,et al. Simulation of electrostatic systems in periodic boundary conditions. II. Equivalence of boundary conditions , 1980, Proceedings of the Royal Society of London. A. Mathematical and Physical Sciences.
[61] Wilfred F. van Gunsteren,et al. Consistent dielectric properties of the simple point charge and extended simple point charge water models at 277 and 300 K , 1994 .
[62] Keith E. Gubbins,et al. Theory of molecular fluids , 1984 .
[63] D. Davidson,et al. Dielectric Properties of Ices II, III, V, and VI , 1965 .
[64] A. J. Stam,et al. Estimation of statistical errors in molecular simulation calculations , 1986 .
[65] Frank H. Stillinger,et al. Molecular Dynamics Study of Temperature Effects on Water Structure and Kinetics , 1972 .