Lantibiotics from Geobacillus thermodenitrificans

The lantibiotic nisin has been used as an effective food preservative to combat food-borne pathogens for over 40 y. Despite this successful use, nisin’s stability at pH 7 is limited. Herein, we describe a nisin analog encoded on the genome of the thermophilic bacterium Geobacillus thermodenitrificans NG80-2. This analog termed geobacillin I was obtained by heterologous expression in Escherichia coli and subsequent purification. Extensive NMR characterization demonstrated that geobacillin I contains seven thioether cross-links, two more than the five cross-links found in nisin and the most cross-links found in any lantibiotic to date. The antimicrobial spectrum of geobacillin I was generally similar to that of nisin A, with increased activity against Streptococcus dysgalactiae, one of the causative agents of bovine mastitis. Geobacillin I demonstrated increased stability compared to nisin A. In addition to geobacillin I, the genome of G. thermodenitrificans NG80-2 also contains a class II lantibiotic biosynthetic gene cluster. The corresponding compound was produced in E. coli, and has a ring topology different than that of any known lantibiotic as determined by tandem mass spectrometry. Interestingly, geobacillin II only demonstrated antimicrobial activity against Bacillus strains. Seven Geobacillus strains were screened for production of the geobacillins using whole-cell MALDI-MS and five were shown to produce geobacillin I, but none produced geobacillin II.

[1]  G. Challis Genome Mining for Novel Natural Product Discovery , 2008 .

[2]  R. Siezen,et al.  Structure and biological activity of chemically modified nisin A species. , 1996, European Journal of Biochemistry.

[3]  Bo Li,et al.  Chapter 21. In vitro studies of lantibiotic biosynthesis. , 2009, Methods in enzymology.

[4]  L. Lian,et al.  Solution structures of nisin A and its two major degradation products determined by n.m.r. , 1992, The Biochemical journal.

[5]  R. P. Ross,et al.  In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria , 2010, BMC Genomics.

[6]  Michael A. Lodato,et al.  SapT, a lanthionine‐containing peptide involved in aerial hyphae formation in the streptomycetes , 2005, Molecular microbiology.

[7]  J. Sweedler,et al.  Studies of the degradation products of nisin, a peptide antibiotic, using capillary electrophoresis with off-line mass spectrometry. , 1996, Journal of chromatography. A.

[8]  M. Hudson,et al.  The SapB morphogen is a lantibiotic-like peptide derived from the product of the developmental gene ramS in Streptomyces coelicolor. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[9]  O. Kuipers,et al.  Production of a Class II Two-Component Lantibiotic of Streptococcus pneumoniae Using the Class I Nisin Synthetic Machinery and Leader Sequence , 2010, Antimicrobial Agents and Chemotherapy.

[10]  Y. Seto,et al.  A unique lantibiotic, thermophilin 1277, containing a disulfide bridge and two thioether bridges , 2009, Journal of applied microbiology.

[11]  R. Evans,et al.  Applications of the bacteriocin, nisin , 1996, Antonie van Leeuwenhoek.

[12]  G. Roberts,et al.  Isolation and characterisation of two degradation products derived from the peptide antibiotic nisin , 1989 .

[13]  W. A. van der Donk,et al.  Genome mining for ribosomally synthesized natural products. , 2011, Current opinion in chemical biology.

[14]  S. Stevanović,et al.  Plantaricin W from Lactobacillus plantarum belongs to a new family of two-peptide lantibiotics. , 2001, Microbiology.

[15]  O. Kuipers,et al.  An Alternative Bactericidal Mechanism of Action for Lantibiotic Peptides That Target Lipid II , 2006, Science.

[16]  S. Mendo,et al.  Heterologous expression, biosynthesis, and mutagenesis of type II lantibiotics from Bacillus licheniformis in Escherichia coli. , 2011, Chemistry & biology.

[17]  W. A. van der Donk,et al.  Follow the leader: the use of leader peptides to guide natural product biosynthesis. , 2010, Nature chemical biology.

[18]  K. Entian,et al.  Biosynthesis of the lantibiotic nisin: genomic organization and membrane localization of the NisB protein , 1992, Applied and Environmental Microbiology.

[19]  Whole-cell matrix-assisted laser desorption/ionization mass spectrometry for rapid identification of bacteriocin/lantibiotic-producing bacteria. , 2008, Rapid communications in mass spectrometry : RCM.

[20]  W. A. van der Donk,et al.  Biosynthesis of the antimicrobial peptide epilancin 15X and its N-terminal lactate. , 2011, Chemistry & biology.

[21]  J. Willey,et al.  Lantibiotics: peptides of diverse structure and function. , 2007, Annual review of microbiology.

[22]  R. P. Ross,et al.  Identification of a novel two-peptide lantibiotic, haloduracin, produced by the alkaliphile Bacillus halodurans C-125. , 2007, FEMS microbiology letters.

[23]  K. Mineev,et al.  Isolation, structure elucidation, and synergistic antibacterial activity of a novel two-component lantibiotic lichenicidin from Bacillus licheniformis VK21. , 2010, Biochemistry.

[24]  B. de Kruijff,et al.  Lipid II: a central component in bacterial cell wall synthesis and a target for antibiotics. , 2008, Prostaglandins, leukotrienes, and essential fatty acids.

[25]  X. Yang,et al.  Production of Lantipeptides in Escherichia coli , 2010, Journal of the American Chemical Society.

[26]  W. D. de Vos,et al.  Improvement of solubility and stability of the antimicrobial peptide nisin by protein engineering , 1995, Applied and environmental microbiology.

[27]  H. Sahl,et al.  Production of the Novel Two-Peptide Lantibiotic Lichenicidin by Bacillus licheniformis DSM 13 , 2009, PloS one.

[28]  Neil L. Kelleher,et al.  Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic , 2006, Proceedings of the National Academy of Sciences.

[29]  Katherine H. Huang,et al.  Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria , 2010, Proceedings of the National Academy of Sciences.

[30]  J. Tagg,et al.  Novel lantibiotics and their pre-peptides , 1996, Antonie van Leeuwenhoek.

[31]  H. Sahl,et al.  Role of lipid‐bound peptidoglycan precursors in the formation of pores by nisin, epidermin and other lantibiotics , 1998, Molecular microbiology.

[32]  E. Breukink,et al.  Lipid II as a target for antibiotics , 2006, Nature Reviews Drug Discovery.

[33]  M. Bibb,et al.  Discovery of Unique Lanthionine Synthetases Reveals New Mechanistic and Evolutionary Insights , 2010, PLoS biology.

[34]  H. Stryhn,et al.  The effect of season on somatic cell count and the incidence of clinical mastitis. , 2007, Journal of dairy science.

[35]  R. Benz,et al.  Lipid II-Mediated Pore Formation by the Peptide Antibiotic Nisin: a Black Lipid Membrane Study , 2004, Journal of bacteriology.

[36]  D. R. Zeigler Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus. , 2005, International journal of systematic and evolutionary microbiology.

[37]  Paul D. Cotter,et al.  Identification of a Novel Two-Peptide Lantibiotic, Lichenicidin, following Rational Genome Mining for LanM Proteins , 2009, Applied and Environmental Microbiology.

[38]  M. Gilmore,et al.  Enterococcal cytolysin: a novel two component peptide system that serves as a bacterial defense against eukaryotic and prokaryotic cells. , 2005, Current protein & peptide science.

[39]  J. E. Velásquez Biosynthesis of the antimicrobial peptide epilancin 15X , 2011 .

[40]  W. A. van der Donk,et al.  Structure-activity relationship studies of the two-component lantibiotic haloduracin. , 2008, Chemistry & biology.

[41]  W. D. de Vos,et al.  University of Groningen Characterization of the Lactococcus lactis Nisin A Operon Genes nisP , Encoding a Subtilisin-Like Serine Protease Involved in Precursor Processing , and nisR , Encoding a Regulatory Protein Involved in Nisin Biosynthesis , 2019 .

[42]  O. Kuipers,et al.  Use of the cell wall precursor lipid II by a pore-forming peptide antibiotic. , 1999, Science.

[43]  Pieter C. Dorrestein,et al.  A mass spectrometry-guided genome mining approach for natural product peptidogenomics , 2011, Nature chemical biology.

[44]  H. Sahl,et al.  Lipid II and other bactoprenol-bound cell wall precursors as drug targets. , 2010, Current opinion in investigational drugs.

[45]  A. Heck,et al.  Lipid II Is an Intrinsic Component of the Pore Induced by Nisin in Bacterial Membranes* , 2003, Journal of Biological Chemistry.

[46]  D. Diep,et al.  A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export , 1995, Molecular microbiology.

[47]  K. Sivonen,et al.  Genome Mining Demonstrates the Widespread Occurrence of Gene Clusters Encoding Bacteriocins in Cyanobacteria , 2011, PloS one.

[48]  Lei Wang,et al.  Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir , 2007, Proceedings of the National Academy of Sciences.